If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ), 'gf_id' => 'HOM05D000610', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000610' ), 'data_identifier' => 'HOM05D000610', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ) $gf_id = 'HOM05D000610' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000610' ) $data_identifier = 'HOM05D000610' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 50, 'aar' => (int) 12, 'aag' => (int) 6, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 13, 'cqu' => (int) 16, 'bca' => (int) 36, 'bol' => (int) 21, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 11, 'ccan' => (int) 25, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 23, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 11, 'gra' => (int) 3, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 15, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310770' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ), 'gf_id' => 'HOM05D000610', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000610' ), 'data_identifier' => 'HOM05D000610', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ) $gf_id = 'HOM05D000610' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000610' ) $data_identifier = 'HOM05D000610' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 50, 'aar' => (int) 12, 'aag' => (int) 6, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 13, 'cqu' => (int) 16, 'bca' => (int) 36, 'bol' => (int) 21, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 11, 'ccan' => (int) 25, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 23, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 11, 'gra' => (int) 3, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 15, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310770' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ), 'gf_id' => 'HOM05D000610', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000610' ), 'data_identifier' => 'HOM05D000610', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ) $gf_id = 'HOM05D000610' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000610' ) $data_identifier = 'HOM05D000610' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 50, 'aar' => (int) 12, 'aag' => (int) 6, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 13, 'cqu' => (int) 16, 'bca' => (int) 36, 'bol' => (int) 21, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 11, 'ccan' => (int) 25, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 23, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 11, 'gra' => (int) 3, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 15, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310770' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ), 'gf_id' => 'HOM05D000610', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000610' ), 'data_identifier' => 'HOM05D000610', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ) $gf_id = 'HOM05D000610' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000610' ) $data_identifier = 'HOM05D000610' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 50, 'aar' => (int) 12, 'aag' => (int) 6, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 13, 'cqu' => (int) 16, 'bca' => (int) 36, 'bol' => (int) 21, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 11, 'ccan' => (int) 25, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 23, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 11, 'gra' => (int) 3, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 15, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310770' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ), 'gf_id' => 'HOM05D000610', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000610' ), 'data_identifier' => 'HOM05D000610', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ) $gf_id = 'HOM05D000610' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000610' ) $data_identifier = 'HOM05D000610' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 50, 'aar' => (int) 12, 'aag' => (int) 6, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 13, 'cqu' => (int) 16, 'bca' => (int) 36, 'bol' => (int) 21, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 11, 'ccan' => (int) 25, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 23, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 11, 'gra' => (int) 3, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 15, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310770' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ), 'gf_id' => 'HOM05D000610', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000610' ), 'data_identifier' => 'HOM05D000610', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ) $gf_id = 'HOM05D000610' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000610' ) $data_identifier = 'HOM05D000610' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 50, 'aar' => (int) 12, 'aag' => (int) 6, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 13, 'cqu' => (int) 16, 'bca' => (int) 36, 'bol' => (int) 21, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 11, 'ccan' => (int) 25, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 23, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 11, 'gra' => (int) 3, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 15, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310770' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ), 'gf_id' => 'HOM05D000610', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000610' ), 'data_identifier' => 'HOM05D000610', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ) $gf_id = 'HOM05D000610' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000610' ) $data_identifier = 'HOM05D000610' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 50, 'aar' => (int) 12, 'aag' => (int) 6, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 13, 'cqu' => (int) 16, 'bca' => (int) 36, 'bol' => (int) 21, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 11, 'ccan' => (int) 25, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 23, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 11, 'gra' => (int) 3, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 15, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310770' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ), 'gf_id' => 'HOM05D000610', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000610' ), 'data_identifier' => 'HOM05D000610', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ) $gf_id = 'HOM05D000610' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000610' ) $data_identifier = 'HOM05D000610' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 50, 'aar' => (int) 12, 'aag' => (int) 6, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 13, 'cqu' => (int) 16, 'bca' => (int) 36, 'bol' => (int) 21, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 11, 'ccan' => (int) 25, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 23, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 11, 'gra' => (int) 3, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 15, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310770' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ), 'gf_id' => 'HOM05D000610', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000610' ), 'data_identifier' => 'HOM05D000610', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ) $gf_id = 'HOM05D000610' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000610' ) $data_identifier = 'HOM05D000610' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 50, 'aar' => (int) 12, 'aag' => (int) 6, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 13, 'cqu' => (int) 16, 'bca' => (int) 36, 'bol' => (int) 21, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 11, 'ccan' => (int) 25, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 23, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 11, 'gra' => (int) 3, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 15, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310770' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ), 'gf_id' => 'HOM05D000610', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000610' ), 'data_identifier' => 'HOM05D000610', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ) $gf_id = 'HOM05D000610' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000610' ) $data_identifier = 'HOM05D000610' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 50, 'aar' => (int) 12, 'aag' => (int) 6, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 13, 'cqu' => (int) 16, 'bca' => (int) 36, 'bol' => (int) 21, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 11, 'ccan' => (int) 25, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 23, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 11, 'gra' => (int) 3, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 15, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310770' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ), 'gf_id' => 'HOM05D000610', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000610' ), 'data_identifier' => 'HOM05D000610', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ) $gf_id = 'HOM05D000610' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000610' ) $data_identifier = 'HOM05D000610' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 50, 'aar' => (int) 12, 'aag' => (int) 6, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 13, 'cqu' => (int) 16, 'bca' => (int) 36, 'bol' => (int) 21, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 11, 'ccan' => (int) 25, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 23, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 11, 'gra' => (int) 3, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 15, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310770' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ), 'gf_id' => 'HOM05D000610', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000610' ), 'data_identifier' => 'HOM05D000610', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ) $gf_id = 'HOM05D000610' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000610' ) $data_identifier = 'HOM05D000610' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 50, 'aar' => (int) 12, 'aag' => (int) 6, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 13, 'cqu' => (int) 16, 'bca' => (int) 36, 'bol' => (int) 21, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 11, 'ccan' => (int) 25, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 23, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 11, 'gra' => (int) 3, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 15, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310770' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ), 'gf_id' => 'HOM05D000610', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000610' ), 'data_identifier' => 'HOM05D000610', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ) $gf_id = 'HOM05D000610' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000610' ) $data_identifier = 'HOM05D000610' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 50, 'aar' => (int) 12, 'aag' => (int) 6, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 13, 'cqu' => (int) 16, 'bca' => (int) 36, 'bol' => (int) 21, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 11, 'ccan' => (int) 25, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 23, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 11, 'gra' => (int) 3, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 15, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310770' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ), 'gf_id' => 'HOM05D000610', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000610' ), 'data_identifier' => 'HOM05D000610', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ) $gf_id = 'HOM05D000610' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000610' ) $data_identifier = 'HOM05D000610' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 50, 'aar' => (int) 12, 'aag' => (int) 6, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 13, 'cqu' => (int) 16, 'bca' => (int) 36, 'bol' => (int) 21, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 11, 'ccan' => (int) 25, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 23, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 11, 'gra' => (int) 3, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 15, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310770' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ), 'gf_id' => 'HOM05D000610', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000610' ), 'data_identifier' => 'HOM05D000610', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ) $gf_id = 'HOM05D000610' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000610' ) $data_identifier = 'HOM05D000610' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 50, 'aar' => (int) 12, 'aag' => (int) 6, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 13, 'cqu' => (int) 16, 'bca' => (int) 36, 'bol' => (int) 21, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 11, 'ccan' => (int) 25, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 23, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 11, 'gra' => (int) 3, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 15, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310770' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ), 'gf_id' => 'HOM05D000610', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000610' ), 'data_identifier' => 'HOM05D000610', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ) $gf_id = 'HOM05D000610' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000610' ) $data_identifier = 'HOM05D000610' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 50, 'aar' => (int) 12, 'aag' => (int) 6, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 13, 'cqu' => (int) 16, 'bca' => (int) 36, 'bol' => (int) 21, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 11, 'ccan' => (int) 25, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 23, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 11, 'gra' => (int) 3, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 15, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310770' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ), 'gf_id' => 'HOM05D000610', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000610' ), 'data_identifier' => 'HOM05D000610', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ) $gf_id = 'HOM05D000610' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000610' ) $data_identifier = 'HOM05D000610' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 50, 'aar' => (int) 12, 'aag' => (int) 6, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 13, 'cqu' => (int) 16, 'bca' => (int) 36, 'bol' => (int) 21, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 11, 'ccan' => (int) 25, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 23, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 11, 'gra' => (int) 3, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 15, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310770' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ), 'gf_id' => 'HOM05D000610', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000610' ), 'data_identifier' => 'HOM05D000610', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ) $gf_id = 'HOM05D000610' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000610' ) $data_identifier = 'HOM05D000610' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 50, 'aar' => (int) 12, 'aag' => (int) 6, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 13, 'cqu' => (int) 16, 'bca' => (int) 36, 'bol' => (int) 21, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 11, 'ccan' => (int) 25, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 23, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 11, 'gra' => (int) 3, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 15, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310770' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ), 'gf_id' => 'HOM05D000610', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000610' ), 'data_identifier' => 'HOM05D000610', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ) $gf_id = 'HOM05D000610' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000610' ) $data_identifier = 'HOM05D000610' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 50, 'aar' => (int) 12, 'aag' => (int) 6, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 13, 'cqu' => (int) 16, 'bca' => (int) 36, 'bol' => (int) 21, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 11, 'ccan' => (int) 25, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 23, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 11, 'gra' => (int) 3, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 15, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310770' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ), 'gf_id' => 'HOM05D000610', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000610' ), 'data_identifier' => 'HOM05D000610', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ) $gf_id = 'HOM05D000610' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000610' ) $data_identifier = 'HOM05D000610' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 50, 'aar' => (int) 12, 'aag' => (int) 6, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 13, 'cqu' => (int) 16, 'bca' => (int) 36, 'bol' => (int) 21, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 11, 'ccan' => (int) 25, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 23, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 11, 'gra' => (int) 3, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 15, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310770' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ), 'gf_id' => 'HOM05D000610', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000610' ), 'data_identifier' => 'HOM05D000610', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ) $gf_id = 'HOM05D000610' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000610' ) $data_identifier = 'HOM05D000610' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 50, 'aar' => (int) 12, 'aag' => (int) 6, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 13, 'cqu' => (int) 16, 'bca' => (int) 36, 'bol' => (int) 21, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 11, 'ccan' => (int) 25, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 23, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 11, 'gra' => (int) 3, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 15, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310770' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ), 'gf_id' => 'HOM05D000610', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000610' ), 'data_identifier' => 'HOM05D000610', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ) $gf_id = 'HOM05D000610' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000610' ) $data_identifier = 'HOM05D000610' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 50, 'aar' => (int) 12, 'aag' => (int) 6, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 13, 'cqu' => (int) 16, 'bca' => (int) 36, 'bol' => (int) 21, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 11, 'ccan' => (int) 25, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 23, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 11, 'gra' => (int) 3, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 15, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310770' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ), 'gf_id' => 'HOM05D000610', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000610' ), 'data_identifier' => 'HOM05D000610', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ) $gf_id = 'HOM05D000610' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000610' ) $data_identifier = 'HOM05D000610' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 50, 'aar' => (int) 12, 'aag' => (int) 6, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 13, 'cqu' => (int) 16, 'bca' => (int) 36, 'bol' => (int) 21, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 11, 'ccan' => (int) 25, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 23, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 11, 'gra' => (int) 3, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 15, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310770' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ), 'gf_id' => 'HOM05D000610', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000610' ), 'data_identifier' => 'HOM05D000610', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ) $gf_id = 'HOM05D000610' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000610' ) $data_identifier = 'HOM05D000610' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 50, 'aar' => (int) 12, 'aag' => (int) 6, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 13, 'cqu' => (int) 16, 'bca' => (int) 36, 'bol' => (int) 21, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 11, 'ccan' => (int) 25, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 23, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 11, 'gra' => (int) 3, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 15, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310770' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ), 'gf_id' => 'HOM05D000610', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000610' ), 'data_identifier' => 'HOM05D000610', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ) $gf_id = 'HOM05D000610' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000610' ) $data_identifier = 'HOM05D000610' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 50, 'aar' => (int) 12, 'aag' => (int) 6, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 13, 'cqu' => (int) 16, 'bca' => (int) 36, 'bol' => (int) 21, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 11, 'ccan' => (int) 25, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 23, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 11, 'gra' => (int) 3, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 15, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310770' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ), 'gf_id' => 'HOM05D000610', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000610' ), 'data_identifier' => 'HOM05D000610', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ) $gf_id = 'HOM05D000610' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000610' ) $data_identifier = 'HOM05D000610' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 50, 'aar' => (int) 12, 'aag' => (int) 6, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 13, 'cqu' => (int) 16, 'bca' => (int) 36, 'bol' => (int) 21, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 11, 'ccan' => (int) 25, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 23, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 11, 'gra' => (int) 3, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 15, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310770' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ), 'gf_id' => 'HOM05D000610', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000610' ), 'data_identifier' => 'HOM05D000610', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ) $gf_id = 'HOM05D000610' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000610' ) $data_identifier = 'HOM05D000610' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 50, 'aar' => (int) 12, 'aag' => (int) 6, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 13, 'cqu' => (int) 16, 'bca' => (int) 36, 'bol' => (int) 21, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 11, 'ccan' => (int) 25, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 23, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 11, 'gra' => (int) 3, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 15, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310770' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ), 'gf_id' => 'HOM05D000610', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000610' ), 'data_identifier' => 'HOM05D000610', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ) $gf_id = 'HOM05D000610' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000610' ) $data_identifier = 'HOM05D000610' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 50, 'aar' => (int) 12, 'aag' => (int) 6, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 13, 'cqu' => (int) 16, 'bca' => (int) 36, 'bol' => (int) 21, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 11, 'ccan' => (int) 25, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 23, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 11, 'gra' => (int) 3, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 15, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310770' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ), 'gf_id' => 'HOM05D000610', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000610' ), 'data_identifier' => 'HOM05D000610', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ) $gf_id = 'HOM05D000610' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000610' ) $data_identifier = 'HOM05D000610' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 50, 'aar' => (int) 12, 'aag' => (int) 6, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 13, 'cqu' => (int) 16, 'bca' => (int) 36, 'bol' => (int) 21, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 11, 'ccan' => (int) 25, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 23, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 11, 'gra' => (int) 3, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 15, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310770' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ), 'gf_id' => 'HOM05D000610', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000610' ), 'data_identifier' => 'HOM05D000610', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ) $gf_id = 'HOM05D000610' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000610' ) $data_identifier = 'HOM05D000610' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 50, 'aar' => (int) 12, 'aag' => (int) 6, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 13, 'cqu' => (int) 16, 'bca' => (int) 36, 'bol' => (int) 21, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 11, 'ccan' => (int) 25, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 23, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 11, 'gra' => (int) 3, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 15, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310770' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ), 'gf_id' => 'HOM05D000610', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000610' ), 'data_identifier' => 'HOM05D000610', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ) $gf_id = 'HOM05D000610' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000610' ) $data_identifier = 'HOM05D000610' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 50, 'aar' => (int) 12, 'aag' => (int) 6, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 13, 'cqu' => (int) 16, 'bca' => (int) 36, 'bol' => (int) 21, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 11, 'ccan' => (int) 25, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 23, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 11, 'gra' => (int) 3, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 15, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310770' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ), 'gf_id' => 'HOM05D000610', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000610' ), 'data_identifier' => 'HOM05D000610', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ) $gf_id = 'HOM05D000610' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000610' ) $data_identifier = 'HOM05D000610' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 50, 'aar' => (int) 12, 'aag' => (int) 6, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 13, 'cqu' => (int) 16, 'bca' => (int) 36, 'bol' => (int) 21, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 11, 'ccan' => (int) 25, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 23, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 11, 'gra' => (int) 3, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 15, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310770' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ), 'gf_id' => 'HOM05D000610', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000610' ), 'data_identifier' => 'HOM05D000610', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ) $gf_id = 'HOM05D000610' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000610' ) $data_identifier = 'HOM05D000610' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 50, 'aar' => (int) 12, 'aag' => (int) 6, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 13, 'cqu' => (int) 16, 'bca' => (int) 36, 'bol' => (int) 21, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 11, 'ccan' => (int) 25, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 23, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 11, 'gra' => (int) 3, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 15, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310770' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ), 'gf_id' => 'HOM05D000610', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000610' ), 'data_identifier' => 'HOM05D000610', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ) $gf_id = 'HOM05D000610' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000610' ) $data_identifier = 'HOM05D000610' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 50, 'aar' => (int) 12, 'aag' => (int) 6, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 13, 'cqu' => (int) 16, 'bca' => (int) 36, 'bol' => (int) 21, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 11, 'ccan' => (int) 25, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 23, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 11, 'gra' => (int) 3, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 15, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310770' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ), 'gf_id' => 'HOM05D000610', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000610' ), 'data_identifier' => 'HOM05D000610', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ) $gf_id = 'HOM05D000610' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000610' ) $data_identifier = 'HOM05D000610' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 50, 'aar' => (int) 12, 'aag' => (int) 6, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 13, 'cqu' => (int) 16, 'bca' => (int) 36, 'bol' => (int) 21, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 11, 'ccan' => (int) 25, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 23, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 11, 'gra' => (int) 3, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 15, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310770' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ), 'gf_id' => 'HOM05D000610', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000610' ), 'data_identifier' => 'HOM05D000610', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ) $gf_id = 'HOM05D000610' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000610' ) $data_identifier = 'HOM05D000610' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 50, 'aar' => (int) 12, 'aag' => (int) 6, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 13, 'cqu' => (int) 16, 'bca' => (int) 36, 'bol' => (int) 21, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 11, 'ccan' => (int) 25, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 23, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 11, 'gra' => (int) 3, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 15, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310770' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ), 'gf_id' => 'HOM05D000610', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000610' ), 'data_identifier' => 'HOM05D000610', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ) $gf_id = 'HOM05D000610' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000610' ) $data_identifier = 'HOM05D000610' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 50, 'aar' => (int) 12, 'aag' => (int) 6, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 13, 'cqu' => (int) 16, 'bca' => (int) 36, 'bol' => (int) 21, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 11, 'ccan' => (int) 25, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 23, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 11, 'gra' => (int) 3, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 15, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310770' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ), 'gf_id' => 'HOM05D000610', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000610' ), 'data_identifier' => 'HOM05D000610', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ) $gf_id = 'HOM05D000610' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000610' ) $data_identifier = 'HOM05D000610' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 50, 'aar' => (int) 12, 'aag' => (int) 6, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 13, 'cqu' => (int) 16, 'bca' => (int) 36, 'bol' => (int) 21, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 11, 'ccan' => (int) 25, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 23, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 11, 'gra' => (int) 3, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 15, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310770' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ), 'gf_id' => 'HOM05D000610', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000610' ), 'data_identifier' => 'HOM05D000610', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ) $gf_id = 'HOM05D000610' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000610' ) $data_identifier = 'HOM05D000610' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 50, 'aar' => (int) 12, 'aag' => (int) 6, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 13, 'cqu' => (int) 16, 'bca' => (int) 36, 'bol' => (int) 21, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 11, 'ccan' => (int) 25, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 23, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 11, 'gra' => (int) 3, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 15, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310770' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ), 'gf_id' => 'HOM05D000610', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000610' ), 'data_identifier' => 'HOM05D000610', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ) $gf_id = 'HOM05D000610' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000610' ) $data_identifier = 'HOM05D000610' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 50, 'aar' => (int) 12, 'aag' => (int) 6, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 13, 'cqu' => (int) 16, 'bca' => (int) 36, 'bol' => (int) 21, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 11, 'ccan' => (int) 25, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 23, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 11, 'gra' => (int) 3, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 15, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310770' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ), 'gf_id' => 'HOM05D000610', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000610' ), 'data_identifier' => 'HOM05D000610', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ) $gf_id = 'HOM05D000610' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000610' ) $data_identifier = 'HOM05D000610' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 50, 'aar' => (int) 12, 'aag' => (int) 6, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 13, 'cqu' => (int) 16, 'bca' => (int) 36, 'bol' => (int) 21, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 11, 'ccan' => (int) 25, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 23, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 11, 'gra' => (int) 3, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 15, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310770' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ), 'gf_id' => 'HOM05D000610', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000610' ), 'data_identifier' => 'HOM05D000610', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ) $gf_id = 'HOM05D000610' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000610' ) $data_identifier = 'HOM05D000610' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 50, 'aar' => (int) 12, 'aag' => (int) 6, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 13, 'cqu' => (int) 16, 'bca' => (int) 36, 'bol' => (int) 21, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 11, 'ccan' => (int) 25, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 23, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 11, 'gra' => (int) 3, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 15, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310770' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ), 'gf_id' => 'HOM05D000610', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000610' ), 'data_identifier' => 'HOM05D000610', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ) $gf_id = 'HOM05D000610' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000610' ) $data_identifier = 'HOM05D000610' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 50, 'aar' => (int) 12, 'aag' => (int) 6, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 13, 'cqu' => (int) 16, 'bca' => (int) 36, 'bol' => (int) 21, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 11, 'ccan' => (int) 25, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 23, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 11, 'gra' => (int) 3, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 15, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310770' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ), 'gf_id' => 'HOM05D000610', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000610' ), 'data_identifier' => 'HOM05D000610', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ) $gf_id = 'HOM05D000610' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000610' ) $data_identifier = 'HOM05D000610' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 50, 'aar' => (int) 12, 'aag' => (int) 6, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 13, 'cqu' => (int) 16, 'bca' => (int) 36, 'bol' => (int) 21, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 11, 'ccan' => (int) 25, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 23, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 11, 'gra' => (int) 3, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 15, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310770' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ), 'gf_id' => 'HOM05D000610', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000610' ), 'data_identifier' => 'HOM05D000610', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ) $gf_id = 'HOM05D000610' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000610' ) $data_identifier = 'HOM05D000610' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 50, 'aar' => (int) 12, 'aag' => (int) 6, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 13, 'cqu' => (int) 16, 'bca' => (int) 36, 'bol' => (int) 21, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 11, 'ccan' => (int) 25, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 23, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 11, 'gra' => (int) 3, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 15, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310770' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ), 'gf_id' => 'HOM05D000610', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000610' ), 'data_identifier' => 'HOM05D000610', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ) $gf_id = 'HOM05D000610' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000610' ) $data_identifier = 'HOM05D000610' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 50, 'aar' => (int) 12, 'aag' => (int) 6, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 13, 'cqu' => (int) 16, 'bca' => (int) 36, 'bol' => (int) 21, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 11, 'ccan' => (int) 25, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 23, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 11, 'gra' => (int) 3, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 15, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310770' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ), 'gf_id' => 'HOM05D000610', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000610' ), 'data_identifier' => 'HOM05D000610', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ) $gf_id = 'HOM05D000610' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000610' ) $data_identifier = 'HOM05D000610' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 50, 'aar' => (int) 12, 'aag' => (int) 6, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 13, 'cqu' => (int) 16, 'bca' => (int) 36, 'bol' => (int) 21, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 11, 'ccan' => (int) 25, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 23, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 11, 'gra' => (int) 3, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 15, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310770' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ), 'gf_id' => 'HOM05D000610', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000610' ), 'data_identifier' => 'HOM05D000610', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ) $gf_id = 'HOM05D000610' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000610' ) $data_identifier = 'HOM05D000610' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 50, 'aar' => (int) 12, 'aag' => (int) 6, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 13, 'cqu' => (int) 16, 'bca' => (int) 36, 'bol' => (int) 21, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 11, 'ccan' => (int) 25, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 23, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 11, 'gra' => (int) 3, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 15, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310770' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ), 'gf_id' => 'HOM05D000610', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000610' ), 'data_identifier' => 'HOM05D000610', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ) $gf_id = 'HOM05D000610' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000610' ) $data_identifier = 'HOM05D000610' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 50, 'aar' => (int) 12, 'aag' => (int) 6, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 13, 'cqu' => (int) 16, 'bca' => (int) 36, 'bol' => (int) 21, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 11, 'ccan' => (int) 25, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 23, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 11, 'gra' => (int) 3, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 15, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310770' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ), 'gf_id' => 'HOM05D000610', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000610' ), 'data_identifier' => 'HOM05D000610', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ) $gf_id = 'HOM05D000610' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000610' ) $data_identifier = 'HOM05D000610' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 50, 'aar' => (int) 12, 'aag' => (int) 6, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 13, 'cqu' => (int) 16, 'bca' => (int) 36, 'bol' => (int) 21, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 11, 'ccan' => (int) 25, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 23, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 11, 'gra' => (int) 3, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 15, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310770' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ), 'gf_id' => 'HOM05D000610', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000610' ), 'data_identifier' => 'HOM05D000610', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ) $gf_id = 'HOM05D000610' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000610' ) $data_identifier = 'HOM05D000610' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 50, 'aar' => (int) 12, 'aag' => (int) 6, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 13, 'cqu' => (int) 16, 'bca' => (int) 36, 'bol' => (int) 21, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 11, 'ccan' => (int) 25, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 23, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 11, 'gra' => (int) 3, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 15, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310770' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ), 'gf_id' => 'HOM05D000610', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000610' ), 'data_identifier' => 'HOM05D000610', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ) $gf_id = 'HOM05D000610' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000610' ) $data_identifier = 'HOM05D000610' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 50, 'aar' => (int) 12, 'aag' => (int) 6, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 13, 'cqu' => (int) 16, 'bca' => (int) 36, 'bol' => (int) 21, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 11, 'ccan' => (int) 25, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 23, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 11, 'gra' => (int) 3, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 15, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310770' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ), 'gf_id' => 'HOM05D000610', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000610' ), 'data_identifier' => 'HOM05D000610', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ) $gf_id = 'HOM05D000610' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000610' ) $data_identifier = 'HOM05D000610' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 50, 'aar' => (int) 12, 'aag' => (int) 6, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 13, 'cqu' => (int) 16, 'bca' => (int) 36, 'bol' => (int) 21, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 11, 'ccan' => (int) 25, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 23, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 11, 'gra' => (int) 3, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 15, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310770' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ), 'gf_id' => 'HOM05D000610', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000610' ), 'data_identifier' => 'HOM05D000610', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ) $gf_id = 'HOM05D000610' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000610' ) $data_identifier = 'HOM05D000610' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 50, 'aar' => (int) 12, 'aag' => (int) 6, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 13, 'cqu' => (int) 16, 'bca' => (int) 36, 'bol' => (int) 21, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 11, 'ccan' => (int) 25, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 23, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 11, 'gra' => (int) 3, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 15, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310770' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ), 'gf_id' => 'HOM05D000610', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000610' ), 'data_identifier' => 'HOM05D000610', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ) $gf_id = 'HOM05D000610' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000610' ) $data_identifier = 'HOM05D000610' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 50, 'aar' => (int) 12, 'aag' => (int) 6, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 13, 'cqu' => (int) 16, 'bca' => (int) 36, 'bol' => (int) 21, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 11, 'ccan' => (int) 25, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 23, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 11, 'gra' => (int) 3, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 15, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310770' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ), 'gf_id' => 'HOM05D000610', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000610' ), 'data_identifier' => 'HOM05D000610', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ) $gf_id = 'HOM05D000610' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000610' ) $data_identifier = 'HOM05D000610' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 50, 'aar' => (int) 12, 'aag' => (int) 6, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 13, 'cqu' => (int) 16, 'bca' => (int) 36, 'bol' => (int) 21, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 11, 'ccan' => (int) 25, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 23, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 11, 'gra' => (int) 3, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 15, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310770' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ), 'gf_id' => 'HOM05D000610', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000610' ), 'data_identifier' => 'HOM05D000610', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ) $gf_id = 'HOM05D000610' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000610' ) $data_identifier = 'HOM05D000610' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 50, 'aar' => (int) 12, 'aag' => (int) 6, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 13, 'cqu' => (int) 16, 'bca' => (int) 36, 'bol' => (int) 21, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 11, 'ccan' => (int) 25, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 23, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 11, 'gra' => (int) 3, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 15, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310770' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ), 'gf_id' => 'HOM05D000610', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000610' ), 'data_identifier' => 'HOM05D000610', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ) $gf_id = 'HOM05D000610' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000610' ) $data_identifier = 'HOM05D000610' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 50, 'aar' => (int) 12, 'aag' => (int) 6, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 13, 'cqu' => (int) 16, 'bca' => (int) 36, 'bol' => (int) 21, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 11, 'ccan' => (int) 25, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 23, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 11, 'gra' => (int) 3, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 15, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310770' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ), 'gf_id' => 'HOM05D000610', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000610' ), 'data_identifier' => 'HOM05D000610', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ) $gf_id = 'HOM05D000610' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000610' ) $data_identifier = 'HOM05D000610' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 50, 'aar' => (int) 12, 'aag' => (int) 6, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 13, 'cqu' => (int) 16, 'bca' => (int) 36, 'bol' => (int) 21, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 11, 'ccan' => (int) 25, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 23, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 11, 'gra' => (int) 3, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 15, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310770' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ), 'gf_id' => 'HOM05D000610', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000610' ), 'data_identifier' => 'HOM05D000610', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ) $gf_id = 'HOM05D000610' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000610' ) $data_identifier = 'HOM05D000610' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 50, 'aar' => (int) 12, 'aag' => (int) 6, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 13, 'cqu' => (int) 16, 'bca' => (int) 36, 'bol' => (int) 21, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 11, 'ccan' => (int) 25, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 23, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 11, 'gra' => (int) 3, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 15, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310770' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ), 'gf_id' => 'HOM05D000610', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000610' ), 'data_identifier' => 'HOM05D000610', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ) $gf_id = 'HOM05D000610' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000610' ) $data_identifier = 'HOM05D000610' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 50, 'aar' => (int) 12, 'aag' => (int) 6, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 13, 'cqu' => (int) 16, 'bca' => (int) 36, 'bol' => (int) 21, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 11, 'ccan' => (int) 25, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 23, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 11, 'gra' => (int) 3, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 15, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310770' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ), 'gf_id' => 'HOM05D000610', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000610' ), 'data_identifier' => 'HOM05D000610', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ) $gf_id = 'HOM05D000610' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000610' ) $data_identifier = 'HOM05D000610' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 50, 'aar' => (int) 12, 'aag' => (int) 6, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 13, 'cqu' => (int) 16, 'bca' => (int) 36, 'bol' => (int) 21, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 11, 'ccan' => (int) 25, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 23, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 11, 'gra' => (int) 3, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 15, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310770' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ), 'gf_id' => 'HOM05D000610', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000610' ), 'data_identifier' => 'HOM05D000610', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ) $gf_id = 'HOM05D000610' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000610' ) $data_identifier = 'HOM05D000610' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 50, 'aar' => (int) 12, 'aag' => (int) 6, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 13, 'cqu' => (int) 16, 'bca' => (int) 36, 'bol' => (int) 21, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 11, 'ccan' => (int) 25, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 23, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 11, 'gra' => (int) 3, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 15, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310770' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ), 'gf_id' => 'HOM05D000610', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000610' ), 'data_identifier' => 'HOM05D000610', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ) $gf_id = 'HOM05D000610' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000610' ) $data_identifier = 'HOM05D000610' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 50, 'aar' => (int) 12, 'aag' => (int) 6, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 13, 'cqu' => (int) 16, 'bca' => (int) 36, 'bol' => (int) 21, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 11, 'ccan' => (int) 25, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 23, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 11, 'gra' => (int) 3, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 15, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310770' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ), 'gf_id' => 'HOM05D000610', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000610' ), 'data_identifier' => 'HOM05D000610', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ) $gf_id = 'HOM05D000610' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000610' ) $data_identifier = 'HOM05D000610' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 50, 'aar' => (int) 12, 'aag' => (int) 6, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 13, 'cqu' => (int) 16, 'bca' => (int) 36, 'bol' => (int) 21, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 11, 'ccan' => (int) 25, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 23, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 11, 'gra' => (int) 3, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 15, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310770' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ), 'gf_id' => 'HOM05D000610', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000610' ), 'data_identifier' => 'HOM05D000610', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ) $gf_id = 'HOM05D000610' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000610' ) $data_identifier = 'HOM05D000610' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 50, 'aar' => (int) 12, 'aag' => (int) 6, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 13, 'cqu' => (int) 16, 'bca' => (int) 36, 'bol' => (int) 21, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 11, 'ccan' => (int) 25, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 23, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 11, 'gra' => (int) 3, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 15, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310770' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ), 'gf_id' => 'HOM05D000610', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000610' ), 'data_identifier' => 'HOM05D000610', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ) $gf_id = 'HOM05D000610' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000610' ) $data_identifier = 'HOM05D000610' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 50, 'aar' => (int) 12, 'aag' => (int) 6, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 13, 'cqu' => (int) 16, 'bca' => (int) 36, 'bol' => (int) 21, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 11, 'ccan' => (int) 25, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 23, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 11, 'gra' => (int) 3, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 15, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310770' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ), 'gf_id' => 'HOM05D000610', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000610' ), 'data_identifier' => 'HOM05D000610', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ) $gf_id = 'HOM05D000610' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000610' ) $data_identifier = 'HOM05D000610' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 50, 'aar' => (int) 12, 'aag' => (int) 6, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 13, 'cqu' => (int) 16, 'bca' => (int) 36, 'bol' => (int) 21, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 11, 'ccan' => (int) 25, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 23, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 11, 'gra' => (int) 3, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 15, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310770' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ), 'gf_id' => 'HOM05D000610', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000610' ), 'data_identifier' => 'HOM05D000610', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ) $gf_id = 'HOM05D000610' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000610' ) $data_identifier = 'HOM05D000610' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 50, 'aar' => (int) 12, 'aag' => (int) 6, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 13, 'cqu' => (int) 16, 'bca' => (int) 36, 'bol' => (int) 21, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 11, 'ccan' => (int) 25, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 23, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 11, 'gra' => (int) 3, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 15, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310770' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ), 'gf_id' => 'HOM05D000610', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000610' ), 'data_identifier' => 'HOM05D000610', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ) $gf_id = 'HOM05D000610' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000610' ) $data_identifier = 'HOM05D000610' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 50, 'aar' => (int) 12, 'aag' => (int) 6, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 13, 'cqu' => (int) 16, 'bca' => (int) 36, 'bol' => (int) 21, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 11, 'ccan' => (int) 25, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 23, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 11, 'gra' => (int) 3, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 15, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310770' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ), 'gf_id' => 'HOM05D000610', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000610' ), 'data_identifier' => 'HOM05D000610', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ) $gf_id = 'HOM05D000610' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000610' ) $data_identifier = 'HOM05D000610' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 50, 'aar' => (int) 12, 'aag' => (int) 6, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 13, 'cqu' => (int) 16, 'bca' => (int) 36, 'bol' => (int) 21, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 11, 'ccan' => (int) 25, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 23, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 11, 'gra' => (int) 3, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 15, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310770' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ), 'gf_id' => 'HOM05D000610', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000610' ), 'data_identifier' => 'HOM05D000610', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ) $gf_id = 'HOM05D000610' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000610' ) $data_identifier = 'HOM05D000610' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 50, 'aar' => (int) 12, 'aag' => (int) 6, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 13, 'cqu' => (int) 16, 'bca' => (int) 36, 'bol' => (int) 21, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 11, 'ccan' => (int) 25, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 23, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 11, 'gra' => (int) 3, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 15, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310770' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ), 'gf_id' => 'HOM05D000610', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000610' ), 'data_identifier' => 'HOM05D000610', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ) $gf_id = 'HOM05D000610' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000610' ) $data_identifier = 'HOM05D000610' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 50, 'aar' => (int) 12, 'aag' => (int) 6, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 13, 'cqu' => (int) 16, 'bca' => (int) 36, 'bol' => (int) 21, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 11, 'ccan' => (int) 25, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 23, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 11, 'gra' => (int) 3, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 15, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310770' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ), 'gf_id' => 'HOM05D000610', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000610' ), 'data_identifier' => 'HOM05D000610', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ) $gf_id = 'HOM05D000610' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000610' ) $data_identifier = 'HOM05D000610' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 50, 'aar' => (int) 12, 'aag' => (int) 6, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 13, 'cqu' => (int) 16, 'bca' => (int) 36, 'bol' => (int) 21, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 11, 'ccan' => (int) 25, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 23, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 11, 'gra' => (int) 3, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 15, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310770' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ), 'gf_id' => 'HOM05D000610', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000610' ), 'data_identifier' => 'HOM05D000610', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ) $gf_id = 'HOM05D000610' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000610' ) $data_identifier = 'HOM05D000610' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 50, 'aar' => (int) 12, 'aag' => (int) 6, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 13, 'cqu' => (int) 16, 'bca' => (int) 36, 'bol' => (int) 21, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 11, 'ccan' => (int) 25, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 23, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 11, 'gra' => (int) 3, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 15, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310770' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ), 'gf_id' => 'HOM05D000610', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000610' ), 'data_identifier' => 'HOM05D000610', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ) $gf_id = 'HOM05D000610' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000610' ) $data_identifier = 'HOM05D000610' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 50, 'aar' => (int) 12, 'aag' => (int) 6, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 13, 'cqu' => (int) 16, 'bca' => (int) 36, 'bol' => (int) 21, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 11, 'ccan' => (int) 25, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 23, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 11, 'gra' => (int) 3, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 15, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310770' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ), 'gf_id' => 'HOM05D000610', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000610' ), 'data_identifier' => 'HOM05D000610', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ) $gf_id = 'HOM05D000610' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000610' ) $data_identifier = 'HOM05D000610' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 50, 'aar' => (int) 12, 'aag' => (int) 6, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 13, 'cqu' => (int) 16, 'bca' => (int) 36, 'bol' => (int) 21, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 11, 'ccan' => (int) 25, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 23, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 11, 'gra' => (int) 3, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 15, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310770' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ), 'gf_id' => 'HOM05D000610', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000610' ), 'data_identifier' => 'HOM05D000610', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ) $gf_id = 'HOM05D000610' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000610' ) $data_identifier = 'HOM05D000610' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 50, 'aar' => (int) 12, 'aag' => (int) 6, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 13, 'cqu' => (int) 16, 'bca' => (int) 36, 'bol' => (int) 21, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 11, 'ccan' => (int) 25, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 23, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 11, 'gra' => (int) 3, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 15, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310770' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ), 'gf_id' => 'HOM05D000610', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000610' ), 'data_identifier' => 'HOM05D000610', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ) $gf_id = 'HOM05D000610' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000610' ) $data_identifier = 'HOM05D000610' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 50, 'aar' => (int) 12, 'aag' => (int) 6, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 13, 'cqu' => (int) 16, 'bca' => (int) 36, 'bol' => (int) 21, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 11, 'ccan' => (int) 25, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 23, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 11, 'gra' => (int) 3, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 15, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310770' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ), 'gf_id' => 'HOM05D000610', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000610' ), 'data_identifier' => 'HOM05D000610', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ) $gf_id = 'HOM05D000610' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000610' ) $data_identifier = 'HOM05D000610' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 50, 'aar' => (int) 12, 'aag' => (int) 6, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 13, 'cqu' => (int) 16, 'bca' => (int) 36, 'bol' => (int) 21, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 11, 'ccan' => (int) 25, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 23, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 11, 'gra' => (int) 3, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 15, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310770' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ), 'gf_id' => 'HOM05D000610', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000610' ), 'data_identifier' => 'HOM05D000610', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ) $gf_id = 'HOM05D000610' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000610' ) $data_identifier = 'HOM05D000610' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 50, 'aar' => (int) 12, 'aag' => (int) 6, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 13, 'cqu' => (int) 16, 'bca' => (int) 36, 'bol' => (int) 21, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 11, 'ccan' => (int) 25, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 23, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 11, 'gra' => (int) 3, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 15, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310770' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ), 'gf_id' => 'HOM05D000610', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000610' ), 'data_identifier' => 'HOM05D000610', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ) $gf_id = 'HOM05D000610' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000610' ) $data_identifier = 'HOM05D000610' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 50, 'aar' => (int) 12, 'aag' => (int) 6, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 13, 'cqu' => (int) 16, 'bca' => (int) 36, 'bol' => (int) 21, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 11, 'ccan' => (int) 25, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 23, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 11, 'gra' => (int) 3, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 15, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310770' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ), 'gf_id' => 'HOM05D000610', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000610' ), 'data_identifier' => 'HOM05D000610', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ) $gf_id = 'HOM05D000610' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000610' ) $data_identifier = 'HOM05D000610' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 50, 'aar' => (int) 12, 'aag' => (int) 6, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 13, 'cqu' => (int) 16, 'bca' => (int) 36, 'bol' => (int) 21, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 11, 'ccan' => (int) 25, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 23, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 11, 'gra' => (int) 3, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 15, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310770' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ), 'gf_id' => 'HOM05D000610', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000610' ), 'data_identifier' => 'HOM05D000610', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ) $gf_id = 'HOM05D000610' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000610' ) $data_identifier = 'HOM05D000610' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 50, 'aar' => (int) 12, 'aag' => (int) 6, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 13, 'cqu' => (int) 16, 'bca' => (int) 36, 'bol' => (int) 21, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 11, 'ccan' => (int) 25, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 23, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 11, 'gra' => (int) 3, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 15, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310770' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ), 'gf_id' => 'HOM05D000610', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000610' ), 'data_identifier' => 'HOM05D000610', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ) $gf_id = 'HOM05D000610' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000610' ) $data_identifier = 'HOM05D000610' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 50, 'aar' => (int) 12, 'aag' => (int) 6, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 13, 'cqu' => (int) 16, 'bca' => (int) 36, 'bol' => (int) 21, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 11, 'ccan' => (int) 25, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 23, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 11, 'gra' => (int) 3, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 15, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310770' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ), 'gf_id' => 'HOM05D000610', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000610' ), 'data_identifier' => 'HOM05D000610', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ) $gf_id = 'HOM05D000610' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000610' ) $data_identifier = 'HOM05D000610' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 50, 'aar' => (int) 12, 'aag' => (int) 6, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 13, 'cqu' => (int) 16, 'bca' => (int) 36, 'bol' => (int) 21, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 11, 'ccan' => (int) 25, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 23, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 11, 'gra' => (int) 3, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 15, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310770' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ), 'gf_id' => 'HOM05D000610', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000610' ), 'data_identifier' => 'HOM05D000610', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ) $gf_id = 'HOM05D000610' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000610' ) $data_identifier = 'HOM05D000610' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 50, 'aar' => (int) 12, 'aag' => (int) 6, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 13, 'cqu' => (int) 16, 'bca' => (int) 36, 'bol' => (int) 21, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 11, 'ccan' => (int) 25, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 23, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 11, 'gra' => (int) 3, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 15, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310770' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ), 'gf_id' => 'HOM05D000610', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000610' ), 'data_identifier' => 'HOM05D000610', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ) $gf_id = 'HOM05D000610' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000610' ) $data_identifier = 'HOM05D000610' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 50, 'aar' => (int) 12, 'aag' => (int) 6, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 13, 'cqu' => (int) 16, 'bca' => (int) 36, 'bol' => (int) 21, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 11, 'ccan' => (int) 25, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 23, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 11, 'gra' => (int) 3, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 15, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310770' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ), 'gf_id' => 'HOM05D000610', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000610' ), 'data_identifier' => 'HOM05D000610', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ) $gf_id = 'HOM05D000610' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000610' ) $data_identifier = 'HOM05D000610' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 50, 'aar' => (int) 12, 'aag' => (int) 6, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 13, 'cqu' => (int) 16, 'bca' => (int) 36, 'bol' => (int) 21, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 11, 'ccan' => (int) 25, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 23, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 11, 'gra' => (int) 3, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 15, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310770' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ), 'gf_id' => 'HOM05D000610', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000610' ), 'data_identifier' => 'HOM05D000610', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ) $gf_id = 'HOM05D000610' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000610' ) $data_identifier = 'HOM05D000610' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 50, 'aar' => (int) 12, 'aag' => (int) 6, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 13, 'cqu' => (int) 16, 'bca' => (int) 36, 'bol' => (int) 21, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 11, 'ccan' => (int) 25, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 23, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 11, 'gra' => (int) 3, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 15, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310770' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ), 'gf_id' => 'HOM05D000610', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000610' ), 'data_identifier' => 'HOM05D000610', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ) $gf_id = 'HOM05D000610' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000610' ) $data_identifier = 'HOM05D000610' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 50, 'aar' => (int) 12, 'aag' => (int) 6, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 13, 'cqu' => (int) 16, 'bca' => (int) 36, 'bol' => (int) 21, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 11, 'ccan' => (int) 25, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 23, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 11, 'gra' => (int) 3, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 15, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310770' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ), 'gf_id' => 'HOM05D000610', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000610' ), 'data_identifier' => 'HOM05D000610', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ) $gf_id = 'HOM05D000610' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000610' ) $data_identifier = 'HOM05D000610' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 50, 'aar' => (int) 12, 'aag' => (int) 6, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 13, 'cqu' => (int) 16, 'bca' => (int) 36, 'bol' => (int) 21, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 11, 'ccan' => (int) 25, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 23, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 11, 'gra' => (int) 3, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 15, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310770' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ), 'gf_id' => 'HOM05D000610', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000610' ), 'data_identifier' => 'HOM05D000610', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ) $gf_id = 'HOM05D000610' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000610' ) $data_identifier = 'HOM05D000610' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 50, 'aar' => (int) 12, 'aag' => (int) 6, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 13, 'cqu' => (int) 16, 'bca' => (int) 36, 'bol' => (int) 21, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 11, 'ccan' => (int) 25, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 23, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 11, 'gra' => (int) 3, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 15, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310770' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ), 'gf_id' => 'HOM05D000610', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000610' ), 'data_identifier' => 'HOM05D000610', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ) $gf_id = 'HOM05D000610' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000610' ) $data_identifier = 'HOM05D000610' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 50, 'aar' => (int) 12, 'aag' => (int) 6, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 13, 'cqu' => (int) 16, 'bca' => (int) 36, 'bol' => (int) 21, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 11, 'ccan' => (int) 25, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 23, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 11, 'gra' => (int) 3, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 15, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310770' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ), 'gf_id' => 'HOM05D000610', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000610' ), 'data_identifier' => 'HOM05D000610', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ) $gf_id = 'HOM05D000610' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000610' ) $data_identifier = 'HOM05D000610' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 50, 'aar' => (int) 12, 'aag' => (int) 6, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 13, 'cqu' => (int) 16, 'bca' => (int) 36, 'bol' => (int) 21, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 11, 'ccan' => (int) 25, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 23, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 11, 'gra' => (int) 3, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 15, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310770' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ), 'gf_id' => 'HOM05D000610', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000610' ), 'data_identifier' => 'HOM05D000610', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ) $gf_id = 'HOM05D000610' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000610' ) $data_identifier = 'HOM05D000610' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 50, 'aar' => (int) 12, 'aag' => (int) 6, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 13, 'cqu' => (int) 16, 'bca' => (int) 36, 'bol' => (int) 21, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 11, 'ccan' => (int) 25, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 23, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 11, 'gra' => (int) 3, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 15, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310770' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ), 'gf_id' => 'HOM05D000610', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000610' ), 'data_identifier' => 'HOM05D000610', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ) $gf_id = 'HOM05D000610' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000610' ) $data_identifier = 'HOM05D000610' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 50, 'aar' => (int) 12, 'aag' => (int) 6, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 13, 'cqu' => (int) 16, 'bca' => (int) 36, 'bol' => (int) 21, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 11, 'ccan' => (int) 25, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 23, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 11, 'gra' => (int) 3, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 15, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310770' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ), 'gf_id' => 'HOM05D000610', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000610' ), 'data_identifier' => 'HOM05D000610', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ) $gf_id = 'HOM05D000610' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000610' ) $data_identifier = 'HOM05D000610' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 50, 'aar' => (int) 12, 'aag' => (int) 6, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 13, 'cqu' => (int) 16, 'bca' => (int) 36, 'bol' => (int) 21, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 11, 'ccan' => (int) 25, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 23, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 11, 'gra' => (int) 3, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 15, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310770' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ), 'gf_id' => 'HOM05D000610', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000610' ), 'data_identifier' => 'HOM05D000610', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ) $gf_id = 'HOM05D000610' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000610' ) $data_identifier = 'HOM05D000610' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 50, 'aar' => (int) 12, 'aag' => (int) 6, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 13, 'cqu' => (int) 16, 'bca' => (int) 36, 'bol' => (int) 21, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 11, 'ccan' => (int) 25, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 23, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 11, 'gra' => (int) 3, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 15, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310770' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ), 'gf_id' => 'HOM05D000610', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000610' ), 'data_identifier' => 'HOM05D000610', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ) $gf_id = 'HOM05D000610' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000610' ) $data_identifier = 'HOM05D000610' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 50, 'aar' => (int) 12, 'aag' => (int) 6, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 13, 'cqu' => (int) 16, 'bca' => (int) 36, 'bol' => (int) 21, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 11, 'ccan' => (int) 25, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 23, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 11, 'gra' => (int) 3, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 15, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310770' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ), 'gf_id' => 'HOM05D000610', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000610' ), 'data_identifier' => 'HOM05D000610', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ) $gf_id = 'HOM05D000610' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000610' ) $data_identifier = 'HOM05D000610' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 50, 'aar' => (int) 12, 'aag' => (int) 6, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 13, 'cqu' => (int) 16, 'bca' => (int) 36, 'bol' => (int) 21, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 11, 'ccan' => (int) 25, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 23, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 11, 'gra' => (int) 3, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 15, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310770' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ), 'gf_id' => 'HOM05D000610', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000610' ), 'data_identifier' => 'HOM05D000610', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ) $gf_id = 'HOM05D000610' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000610' ) $data_identifier = 'HOM05D000610' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 50, 'aar' => (int) 12, 'aag' => (int) 6, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 13, 'cqu' => (int) 16, 'bca' => (int) 36, 'bol' => (int) 21, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 11, 'ccan' => (int) 25, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 23, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 11, 'gra' => (int) 3, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 15, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310770' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ), 'gf_id' => 'HOM05D000610', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000610' ), 'data_identifier' => 'HOM05D000610', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ) $gf_id = 'HOM05D000610' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000610' ) $data_identifier = 'HOM05D000610' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 50, 'aar' => (int) 12, 'aag' => (int) 6, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 13, 'cqu' => (int) 16, 'bca' => (int) 36, 'bol' => (int) 21, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 11, 'ccan' => (int) 25, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 23, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 11, 'gra' => (int) 3, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 15, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310770' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ), 'gf_id' => 'HOM05D000610', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000610' ), 'data_identifier' => 'HOM05D000610', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ) $gf_id = 'HOM05D000610' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000610' ) $data_identifier = 'HOM05D000610' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 50, 'aar' => (int) 12, 'aag' => (int) 6, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 13, 'cqu' => (int) 16, 'bca' => (int) 36, 'bol' => (int) 21, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 11, 'ccan' => (int) 25, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 23, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 11, 'gra' => (int) 3, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 15, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310770' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ), 'gf_id' => 'HOM05D000610', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000610' ), 'data_identifier' => 'HOM05D000610', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ) $gf_id = 'HOM05D000610' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000610' ) $data_identifier = 'HOM05D000610' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 50, 'aar' => (int) 12, 'aag' => (int) 6, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 13, 'cqu' => (int) 16, 'bca' => (int) 36, 'bol' => (int) 21, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 11, 'ccan' => (int) 25, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 23, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 11, 'gra' => (int) 3, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 15, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310770' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ), 'gf_id' => 'HOM05D000610', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000610' ), 'data_identifier' => 'HOM05D000610', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ) $gf_id = 'HOM05D000610' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000610' ) $data_identifier = 'HOM05D000610' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 50, 'aar' => (int) 12, 'aag' => (int) 6, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 13, 'cqu' => (int) 16, 'bca' => (int) 36, 'bol' => (int) 21, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 11, 'ccan' => (int) 25, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 23, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 11, 'gra' => (int) 3, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 15, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310770' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ), 'gf_id' => 'HOM05D000610', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000610' ), 'data_identifier' => 'HOM05D000610', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ) $gf_id = 'HOM05D000610' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000610' ) $data_identifier = 'HOM05D000610' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 50, 'aar' => (int) 12, 'aag' => (int) 6, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 13, 'cqu' => (int) 16, 'bca' => (int) 36, 'bol' => (int) 21, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 11, 'ccan' => (int) 25, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 23, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 11, 'gra' => (int) 3, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 15, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310770' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ), 'gf_id' => 'HOM05D000610', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000610' ), 'data_identifier' => 'HOM05D000610', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ) $gf_id = 'HOM05D000610' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000610' ) $data_identifier = 'HOM05D000610' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 50, 'aar' => (int) 12, 'aag' => (int) 6, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 13, 'cqu' => (int) 16, 'bca' => (int) 36, 'bol' => (int) 21, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 11, 'ccan' => (int) 25, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 23, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 11, 'gra' => (int) 3, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 15, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310770' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ), 'gf_id' => 'HOM05D000610', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000610' ), 'data_identifier' => 'HOM05D000610', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ) $gf_id = 'HOM05D000610' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000610' ) $data_identifier = 'HOM05D000610' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 50, 'aar' => (int) 12, 'aag' => (int) 6, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 13, 'cqu' => (int) 16, 'bca' => (int) 36, 'bol' => (int) 21, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 11, 'ccan' => (int) 25, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 23, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 11, 'gra' => (int) 3, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 15, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310770' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ), 'gf_id' => 'HOM05D000610', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000610' ), 'data_identifier' => 'HOM05D000610', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ) $gf_id = 'HOM05D000610' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000610' ) $data_identifier = 'HOM05D000610' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 50, 'aar' => (int) 12, 'aag' => (int) 6, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 13, 'cqu' => (int) 16, 'bca' => (int) 36, 'bol' => (int) 21, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 11, 'ccan' => (int) 25, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 23, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 11, 'gra' => (int) 3, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 15, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310770' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ), 'gf_id' => 'HOM05D000610', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000610' ), 'data_identifier' => 'HOM05D000610', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ) $gf_id = 'HOM05D000610' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000610' ) $data_identifier = 'HOM05D000610' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 50, 'aar' => (int) 12, 'aag' => (int) 6, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 13, 'cqu' => (int) 16, 'bca' => (int) 36, 'bol' => (int) 21, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 11, 'ccan' => (int) 25, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 23, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 11, 'gra' => (int) 3, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 15, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310770' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ), 'gf_id' => 'HOM05D000610', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000610' ), 'data_identifier' => 'HOM05D000610', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ) $gf_id = 'HOM05D000610' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000610' ) $data_identifier = 'HOM05D000610' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 50, 'aar' => (int) 12, 'aag' => (int) 6, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 13, 'cqu' => (int) 16, 'bca' => (int) 36, 'bol' => (int) 21, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 11, 'ccan' => (int) 25, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 23, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 11, 'gra' => (int) 3, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 15, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310770' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ), 'gf_id' => 'HOM05D000610', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000610' ), 'data_identifier' => 'HOM05D000610', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ) $gf_id = 'HOM05D000610' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000610' ) $data_identifier = 'HOM05D000610' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 50, 'aar' => (int) 12, 'aag' => (int) 6, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 13, 'cqu' => (int) 16, 'bca' => (int) 36, 'bol' => (int) 21, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 11, 'ccan' => (int) 25, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 23, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 11, 'gra' => (int) 3, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 15, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310770' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ), 'gf_id' => 'HOM05D000610', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000610' ), 'data_identifier' => 'HOM05D000610', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ) $gf_id = 'HOM05D000610' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000610' ) $data_identifier = 'HOM05D000610' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 50, 'aar' => (int) 12, 'aag' => (int) 6, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 13, 'cqu' => (int) 16, 'bca' => (int) 36, 'bol' => (int) 21, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 11, 'ccan' => (int) 25, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 23, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 11, 'gra' => (int) 3, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 15, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310770' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ), 'gf_id' => 'HOM05D000610', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000610' ), 'data_identifier' => 'HOM05D000610', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ) $gf_id = 'HOM05D000610' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000610' ) $data_identifier = 'HOM05D000610' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 50, 'aar' => (int) 12, 'aag' => (int) 6, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 13, 'cqu' => (int) 16, 'bca' => (int) 36, 'bol' => (int) 21, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 11, 'ccan' => (int) 25, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 23, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 11, 'gra' => (int) 3, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 15, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310770' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ), 'gf_id' => 'HOM05D000610', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000610' ), 'data_identifier' => 'HOM05D000610', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ) $gf_id = 'HOM05D000610' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000610' ) $data_identifier = 'HOM05D000610' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 50, 'aar' => (int) 12, 'aag' => (int) 6, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 13, 'cqu' => (int) 16, 'bca' => (int) 36, 'bol' => (int) 21, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 11, 'ccan' => (int) 25, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 23, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 11, 'gra' => (int) 3, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 15, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310770' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ), 'gf_id' => 'HOM05D000610', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000610' ), 'data_identifier' => 'HOM05D000610', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ) $gf_id = 'HOM05D000610' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000610' ) $data_identifier = 'HOM05D000610' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 50, 'aar' => (int) 12, 'aag' => (int) 6, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 13, 'cqu' => (int) 16, 'bca' => (int) 36, 'bol' => (int) 21, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 11, 'ccan' => (int) 25, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 23, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 11, 'gra' => (int) 3, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 15, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310770' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ), 'gf_id' => 'HOM05D000610', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000610' ), 'data_identifier' => 'HOM05D000610', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ) $gf_id = 'HOM05D000610' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000610' ) $data_identifier = 'HOM05D000610' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 50, 'aar' => (int) 12, 'aag' => (int) 6, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 13, 'cqu' => (int) 16, 'bca' => (int) 36, 'bol' => (int) 21, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 11, 'ccan' => (int) 25, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 23, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 11, 'gra' => (int) 3, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 15, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310770' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ), 'gf_id' => 'HOM05D000610', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000610' ), 'data_identifier' => 'HOM05D000610', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ) $gf_id = 'HOM05D000610' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000610' ) $data_identifier = 'HOM05D000610' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 50, 'aar' => (int) 12, 'aag' => (int) 6, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 13, 'cqu' => (int) 16, 'bca' => (int) 36, 'bol' => (int) 21, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 11, 'ccan' => (int) 25, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 23, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 11, 'gra' => (int) 3, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 15, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310770' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ), 'gf_id' => 'HOM05D000610', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000610' ), 'data_identifier' => 'HOM05D000610', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ) $gf_id = 'HOM05D000610' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000610' ) $data_identifier = 'HOM05D000610' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 50, 'aar' => (int) 12, 'aag' => (int) 6, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 13, 'cqu' => (int) 16, 'bca' => (int) 36, 'bol' => (int) 21, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 11, 'ccan' => (int) 25, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 23, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 11, 'gra' => (int) 3, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 15, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310770' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ), 'gf_id' => 'HOM05D000610', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000610' ), 'data_identifier' => 'HOM05D000610', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ) $gf_id = 'HOM05D000610' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000610' ) $data_identifier = 'HOM05D000610' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 50, 'aar' => (int) 12, 'aag' => (int) 6, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 13, 'cqu' => (int) 16, 'bca' => (int) 36, 'bol' => (int) 21, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 11, 'ccan' => (int) 25, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 23, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 11, 'gra' => (int) 3, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 15, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310770' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ), 'gf_id' => 'HOM05D000610', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000610' ), 'data_identifier' => 'HOM05D000610', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ) $gf_id = 'HOM05D000610' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000610' ) $data_identifier = 'HOM05D000610' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 50, 'aar' => (int) 12, 'aag' => (int) 6, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 13, 'cqu' => (int) 16, 'bca' => (int) 36, 'bol' => (int) 21, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 11, 'ccan' => (int) 25, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 23, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 11, 'gra' => (int) 3, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 15, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310770' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ), 'gf_id' => 'HOM05D000610', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000610' ), 'data_identifier' => 'HOM05D000610', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ) $gf_id = 'HOM05D000610' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000610' ) $data_identifier = 'HOM05D000610' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 50, 'aar' => (int) 12, 'aag' => (int) 6, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 13, 'cqu' => (int) 16, 'bca' => (int) 36, 'bol' => (int) 21, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 11, 'ccan' => (int) 25, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 23, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 11, 'gra' => (int) 3, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 15, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310770' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ), 'gf_id' => 'HOM05D000610', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000610' ), 'data_identifier' => 'HOM05D000610', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ) $gf_id = 'HOM05D000610' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000610' ) $data_identifier = 'HOM05D000610' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 50, 'aar' => (int) 12, 'aag' => (int) 6, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 13, 'cqu' => (int) 16, 'bca' => (int) 36, 'bol' => (int) 21, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 11, 'ccan' => (int) 25, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 23, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 11, 'gra' => (int) 3, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 15, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310770' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ), 'gf_id' => 'HOM05D000610', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000610' ), 'data_identifier' => 'HOM05D000610', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ) $gf_id = 'HOM05D000610' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000610' ) $data_identifier = 'HOM05D000610' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 50, 'aar' => (int) 12, 'aag' => (int) 6, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 13, 'cqu' => (int) 16, 'bca' => (int) 36, 'bol' => (int) 21, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 11, 'ccan' => (int) 25, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 23, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 11, 'gra' => (int) 3, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 15, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310770' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ), 'gf_id' => 'HOM05D000610', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000610' ), 'data_identifier' => 'HOM05D000610', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ) $gf_id = 'HOM05D000610' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000610' ) $data_identifier = 'HOM05D000610' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 50, 'aar' => (int) 12, 'aag' => (int) 6, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 13, 'cqu' => (int) 16, 'bca' => (int) 36, 'bol' => (int) 21, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 11, 'ccan' => (int) 25, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 23, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 11, 'gra' => (int) 3, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 15, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310770' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ), 'gf_id' => 'HOM05D000610', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000610' ), 'data_identifier' => 'HOM05D000610', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ) $gf_id = 'HOM05D000610' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000610' ) $data_identifier = 'HOM05D000610' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 50, 'aar' => (int) 12, 'aag' => (int) 6, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 13, 'cqu' => (int) 16, 'bca' => (int) 36, 'bol' => (int) 21, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 11, 'ccan' => (int) 25, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 23, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 11, 'gra' => (int) 3, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 15, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310770' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ), 'gf_id' => 'HOM05D000610', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000610' ), 'data_identifier' => 'HOM05D000610', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ) $gf_id = 'HOM05D000610' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000610' ) $data_identifier = 'HOM05D000610' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 50, 'aar' => (int) 12, 'aag' => (int) 6, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 13, 'cqu' => (int) 16, 'bca' => (int) 36, 'bol' => (int) 21, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 11, 'ccan' => (int) 25, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 23, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 11, 'gra' => (int) 3, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 15, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310770' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ), 'gf_id' => 'HOM05D000610', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000610' ), 'data_identifier' => 'HOM05D000610', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ) $gf_id = 'HOM05D000610' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000610' ) $data_identifier = 'HOM05D000610' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 50, 'aar' => (int) 12, 'aag' => (int) 6, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 13, 'cqu' => (int) 16, 'bca' => (int) 36, 'bol' => (int) 21, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 11, 'ccan' => (int) 25, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 23, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 11, 'gra' => (int) 3, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 15, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310770' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ), 'gf_id' => 'HOM05D000610', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000610' ), 'data_identifier' => 'HOM05D000610', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ) $gf_id = 'HOM05D000610' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000610' ) $data_identifier = 'HOM05D000610' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 50, 'aar' => (int) 12, 'aag' => (int) 6, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 13, 'cqu' => (int) 16, 'bca' => (int) 36, 'bol' => (int) 21, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 11, 'ccan' => (int) 25, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 23, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 11, 'gra' => (int) 3, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 15, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310770' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ), 'gf_id' => 'HOM05D000610', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000610' ), 'data_identifier' => 'HOM05D000610', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ) $gf_id = 'HOM05D000610' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000610' ) $data_identifier = 'HOM05D000610' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 50, 'aar' => (int) 12, 'aag' => (int) 6, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 13, 'cqu' => (int) 16, 'bca' => (int) 36, 'bol' => (int) 21, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 11, 'ccan' => (int) 25, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 23, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 11, 'gra' => (int) 3, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 15, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310770' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ), 'gf_id' => 'HOM05D000610', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000610' ), 'data_identifier' => 'HOM05D000610', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ) $gf_id = 'HOM05D000610' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000610' ) $data_identifier = 'HOM05D000610' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 50, 'aar' => (int) 12, 'aag' => (int) 6, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 13, 'cqu' => (int) 16, 'bca' => (int) 36, 'bol' => (int) 21, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 11, 'ccan' => (int) 25, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 23, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 11, 'gra' => (int) 3, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 15, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310770' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ), 'gf_id' => 'HOM05D000610', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000610' ), 'data_identifier' => 'HOM05D000610', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ) $gf_id = 'HOM05D000610' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000610' ) $data_identifier = 'HOM05D000610' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 50, 'aar' => (int) 12, 'aag' => (int) 6, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 13, 'cqu' => (int) 16, 'bca' => (int) 36, 'bol' => (int) 21, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 11, 'ccan' => (int) 25, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 23, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 11, 'gra' => (int) 3, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 15, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310770' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ), 'gf_id' => 'HOM05D000610', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000610' ), 'data_identifier' => 'HOM05D000610', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ) $gf_id = 'HOM05D000610' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000610' ) $data_identifier = 'HOM05D000610' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 50, 'aar' => (int) 12, 'aag' => (int) 6, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 13, 'cqu' => (int) 16, 'bca' => (int) 36, 'bol' => (int) 21, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 11, 'ccan' => (int) 25, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 23, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 11, 'gra' => (int) 3, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 15, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310770' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ), 'gf_id' => 'HOM05D000610', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000610' ), 'data_identifier' => 'HOM05D000610', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ) $gf_id = 'HOM05D000610' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000610' ) $data_identifier = 'HOM05D000610' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 50, 'aar' => (int) 12, 'aag' => (int) 6, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 13, 'cqu' => (int) 16, 'bca' => (int) 36, 'bol' => (int) 21, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 11, 'ccan' => (int) 25, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 23, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 11, 'gra' => (int) 3, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 15, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310770' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ), 'gf_id' => 'HOM05D000610', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000610' ), 'data_identifier' => 'HOM05D000610', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ) $gf_id = 'HOM05D000610' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000610' ) $data_identifier = 'HOM05D000610' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 50, 'aar' => (int) 12, 'aag' => (int) 6, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 13, 'cqu' => (int) 16, 'bca' => (int) 36, 'bol' => (int) 21, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 11, 'ccan' => (int) 25, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 23, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 11, 'gra' => (int) 3, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 15, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310770' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ), 'gf_id' => 'HOM05D000610', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000610' ), 'data_identifier' => 'HOM05D000610', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ) $gf_id = 'HOM05D000610' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000610' ) $data_identifier = 'HOM05D000610' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 50, 'aar' => (int) 12, 'aag' => (int) 6, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 13, 'cqu' => (int) 16, 'bca' => (int) 36, 'bol' => (int) 21, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 11, 'ccan' => (int) 25, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 23, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 11, 'gra' => (int) 3, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 15, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310770' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ), 'gf_id' => 'HOM05D000610', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000610' ), 'data_identifier' => 'HOM05D000610', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ) $gf_id = 'HOM05D000610' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000610' ) $data_identifier = 'HOM05D000610' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 50, 'aar' => (int) 12, 'aag' => (int) 6, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 13, 'cqu' => (int) 16, 'bca' => (int) 36, 'bol' => (int) 21, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 11, 'ccan' => (int) 25, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 23, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 11, 'gra' => (int) 3, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 15, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310770' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ), 'gf_id' => 'HOM05D000610', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000610' ), 'data_identifier' => 'HOM05D000610', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ) $gf_id = 'HOM05D000610' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000610' ) $data_identifier = 'HOM05D000610' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 50, 'aar' => (int) 12, 'aag' => (int) 6, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 13, 'cqu' => (int) 16, 'bca' => (int) 36, 'bol' => (int) 21, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 11, 'ccan' => (int) 25, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 23, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 11, 'gra' => (int) 3, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 15, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310770' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ), 'gf_id' => 'HOM05D000610', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000610' ), 'data_identifier' => 'HOM05D000610', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ) $gf_id = 'HOM05D000610' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000610' ) $data_identifier = 'HOM05D000610' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 50, 'aar' => (int) 12, 'aag' => (int) 6, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 13, 'cqu' => (int) 16, 'bca' => (int) 36, 'bol' => (int) 21, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 11, 'ccan' => (int) 25, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 23, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 11, 'gra' => (int) 3, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 15, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310770' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ), 'gf_id' => 'HOM05D000610', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000610' ), 'data_identifier' => 'HOM05D000610', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ) $gf_id = 'HOM05D000610' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000610' ) $data_identifier = 'HOM05D000610' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 50, 'aar' => (int) 12, 'aag' => (int) 6, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 13, 'cqu' => (int) 16, 'bca' => (int) 36, 'bol' => (int) 21, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 11, 'ccan' => (int) 25, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 23, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 11, 'gra' => (int) 3, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 15, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310770' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ), 'gf_id' => 'HOM05D000610', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000610' ), 'data_identifier' => 'HOM05D000610', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ) $gf_id = 'HOM05D000610' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000610' ) $data_identifier = 'HOM05D000610' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 50, 'aar' => (int) 12, 'aag' => (int) 6, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 13, 'cqu' => (int) 16, 'bca' => (int) 36, 'bol' => (int) 21, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 11, 'ccan' => (int) 25, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 23, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 11, 'gra' => (int) 3, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 15, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310770' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ), 'gf_id' => 'HOM05D000610', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000610' ), 'data_identifier' => 'HOM05D000610', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ) $gf_id = 'HOM05D000610' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000610' ) $data_identifier = 'HOM05D000610' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 50, 'aar' => (int) 12, 'aag' => (int) 6, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 13, 'cqu' => (int) 16, 'bca' => (int) 36, 'bol' => (int) 21, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 11, 'ccan' => (int) 25, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 23, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 11, 'gra' => (int) 3, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 15, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310770' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ), 'gf_id' => 'HOM05D000610', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000610' ), 'data_identifier' => 'HOM05D000610', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ) $gf_id = 'HOM05D000610' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000610' ) $data_identifier = 'HOM05D000610' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 50, 'aar' => (int) 12, 'aag' => (int) 6, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 13, 'cqu' => (int) 16, 'bca' => (int) 36, 'bol' => (int) 21, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 11, 'ccan' => (int) 25, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 23, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 11, 'gra' => (int) 3, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 15, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310770' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ), 'gf_id' => 'HOM05D000610', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000610' ), 'data_identifier' => 'HOM05D000610', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ) $gf_id = 'HOM05D000610' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000610' ) $data_identifier = 'HOM05D000610' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 50, 'aar' => (int) 12, 'aag' => (int) 6, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 13, 'cqu' => (int) 16, 'bca' => (int) 36, 'bol' => (int) 21, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 11, 'ccan' => (int) 25, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 23, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 11, 'gra' => (int) 3, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 15, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310770' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ), 'gf_id' => 'HOM05D000610', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000610' ), 'data_identifier' => 'HOM05D000610', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ) $gf_id = 'HOM05D000610' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000610' ) $data_identifier = 'HOM05D000610' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 50, 'aar' => (int) 12, 'aag' => (int) 6, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 13, 'cqu' => (int) 16, 'bca' => (int) 36, 'bol' => (int) 21, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 11, 'ccan' => (int) 25, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 23, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 11, 'gra' => (int) 3, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 15, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310770' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ), 'gf_id' => 'HOM05D000610', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000610' ), 'data_identifier' => 'HOM05D000610', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ) $gf_id = 'HOM05D000610' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000610' ) $data_identifier = 'HOM05D000610' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 50, 'aar' => (int) 12, 'aag' => (int) 6, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 13, 'cqu' => (int) 16, 'bca' => (int) 36, 'bol' => (int) 21, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 11, 'ccan' => (int) 25, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 23, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 11, 'gra' => (int) 3, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 15, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310770' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ), 'gf_id' => 'HOM05D000610', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000610' ), 'data_identifier' => 'HOM05D000610', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ) $gf_id = 'HOM05D000610' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000610' ) $data_identifier = 'HOM05D000610' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 50, 'aar' => (int) 12, 'aag' => (int) 6, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 13, 'cqu' => (int) 16, 'bca' => (int) 36, 'bol' => (int) 21, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 11, 'ccan' => (int) 25, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 23, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 11, 'gra' => (int) 3, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 15, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310770' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ), 'gf_id' => 'HOM05D000610', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000610' ), 'data_identifier' => 'HOM05D000610', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ) $gf_id = 'HOM05D000610' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000610' ) $data_identifier = 'HOM05D000610' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 50, 'aar' => (int) 12, 'aag' => (int) 6, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 13, 'cqu' => (int) 16, 'bca' => (int) 36, 'bol' => (int) 21, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 11, 'ccan' => (int) 25, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 23, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 11, 'gra' => (int) 3, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 15, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310770' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ), 'gf_id' => 'HOM05D000610', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000610' ), 'data_identifier' => 'HOM05D000610', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ) $gf_id = 'HOM05D000610' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000610' ) $data_identifier = 'HOM05D000610' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 50, 'aar' => (int) 12, 'aag' => (int) 6, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 13, 'cqu' => (int) 16, 'bca' => (int) 36, 'bol' => (int) 21, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 11, 'ccan' => (int) 25, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 23, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 11, 'gra' => (int) 3, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 15, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310770' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ), 'gf_id' => 'HOM05D000610', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000610' ), 'data_identifier' => 'HOM05D000610', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ) $gf_id = 'HOM05D000610' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000610' ) $data_identifier = 'HOM05D000610' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 50, 'aar' => (int) 12, 'aag' => (int) 6, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 13, 'cqu' => (int) 16, 'bca' => (int) 36, 'bol' => (int) 21, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 11, 'ccan' => (int) 25, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 23, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 11, 'gra' => (int) 3, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 15, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310770' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ), 'gf_id' => 'HOM05D000610', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000610' ), 'data_identifier' => 'HOM05D000610', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ) $gf_id = 'HOM05D000610' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000610' ) $data_identifier = 'HOM05D000610' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 50, 'aar' => (int) 12, 'aag' => (int) 6, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 13, 'cqu' => (int) 16, 'bca' => (int) 36, 'bol' => (int) 21, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 11, 'ccan' => (int) 25, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 23, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 11, 'gra' => (int) 3, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 15, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310770' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ), 'gf_id' => 'HOM05D000610', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000610' ), 'data_identifier' => 'HOM05D000610', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ) $gf_id = 'HOM05D000610' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000610' ) $data_identifier = 'HOM05D000610' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 50, 'aar' => (int) 12, 'aag' => (int) 6, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 13, 'cqu' => (int) 16, 'bca' => (int) 36, 'bol' => (int) 21, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 11, 'ccan' => (int) 25, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 23, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 11, 'gra' => (int) 3, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 15, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310770' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ), 'gf_id' => 'HOM05D000610', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000610' ), 'data_identifier' => 'HOM05D000610', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ) $gf_id = 'HOM05D000610' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000610' ) $data_identifier = 'HOM05D000610' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 50, 'aar' => (int) 12, 'aag' => (int) 6, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 13, 'cqu' => (int) 16, 'bca' => (int) 36, 'bol' => (int) 21, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 11, 'ccan' => (int) 25, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 23, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 11, 'gra' => (int) 3, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 15, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310770' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ), 'gf_id' => 'HOM05D000610', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000610' ), 'data_identifier' => 'HOM05D000610', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ) $gf_id = 'HOM05D000610' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000610' ) $data_identifier = 'HOM05D000610' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 50, 'aar' => (int) 12, 'aag' => (int) 6, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 13, 'cqu' => (int) 16, 'bca' => (int) 36, 'bol' => (int) 21, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 11, 'ccan' => (int) 25, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 23, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 11, 'gra' => (int) 3, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 15, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310770' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ), 'gf_id' => 'HOM05D000610', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000610' ), 'data_identifier' => 'HOM05D000610', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ) $gf_id = 'HOM05D000610' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000610' ) $data_identifier = 'HOM05D000610' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 50, 'aar' => (int) 12, 'aag' => (int) 6, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 13, 'cqu' => (int) 16, 'bca' => (int) 36, 'bol' => (int) 21, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 11, 'ccan' => (int) 25, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 23, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 11, 'gra' => (int) 3, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 15, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310770' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ), 'gf_id' => 'HOM05D000610', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000610' ), 'data_identifier' => 'HOM05D000610', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ) $gf_id = 'HOM05D000610' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000610' ) $data_identifier = 'HOM05D000610' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 50, 'aar' => (int) 12, 'aag' => (int) 6, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 13, 'cqu' => (int) 16, 'bca' => (int) 36, 'bol' => (int) 21, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 11, 'ccan' => (int) 25, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 23, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 11, 'gra' => (int) 3, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 15, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310770' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ), 'gf_id' => 'HOM05D000610', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000610' ), 'data_identifier' => 'HOM05D000610', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ) $gf_id = 'HOM05D000610' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000610' ) $data_identifier = 'HOM05D000610' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 50, 'aar' => (int) 12, 'aag' => (int) 6, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 13, 'cqu' => (int) 16, 'bca' => (int) 36, 'bol' => (int) 21, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 11, 'ccan' => (int) 25, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 23, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 11, 'gra' => (int) 3, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 15, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310770' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ), 'gf_id' => 'HOM05D000610', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000610' ), 'data_identifier' => 'HOM05D000610', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ) $gf_id = 'HOM05D000610' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000610' ) $data_identifier = 'HOM05D000610' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 50, 'aar' => (int) 12, 'aag' => (int) 6, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 13, 'cqu' => (int) 16, 'bca' => (int) 36, 'bol' => (int) 21, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 11, 'ccan' => (int) 25, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 23, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 11, 'gra' => (int) 3, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 15, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310770' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ), 'gf_id' => 'HOM05D000610', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000610' ), 'data_identifier' => 'HOM05D000610', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ) $gf_id = 'HOM05D000610' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000610' ) $data_identifier = 'HOM05D000610' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 50, 'aar' => (int) 12, 'aag' => (int) 6, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 13, 'cqu' => (int) 16, 'bca' => (int) 36, 'bol' => (int) 21, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 11, 'ccan' => (int) 25, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 23, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 11, 'gra' => (int) 3, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 15, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310770' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ), 'gf_id' => 'HOM05D000610', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000610' ), 'data_identifier' => 'HOM05D000610', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ) $gf_id = 'HOM05D000610' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000610' ) $data_identifier = 'HOM05D000610' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 50, 'aar' => (int) 12, 'aag' => (int) 6, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 13, 'cqu' => (int) 16, 'bca' => (int) 36, 'bol' => (int) 21, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 11, 'ccan' => (int) 25, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 23, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 11, 'gra' => (int) 3, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 15, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310770' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ), 'gf_id' => 'HOM05D000610', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000610' ), 'data_identifier' => 'HOM05D000610', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ) $gf_id = 'HOM05D000610' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000610' ) $data_identifier = 'HOM05D000610' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 50, 'aar' => (int) 12, 'aag' => (int) 6, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 13, 'cqu' => (int) 16, 'bca' => (int) 36, 'bol' => (int) 21, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 11, 'ccan' => (int) 25, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 23, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 11, 'gra' => (int) 3, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 15, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310770' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ), 'gf_id' => 'HOM05D000610', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000610' ), 'data_identifier' => 'HOM05D000610', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ) $gf_id = 'HOM05D000610' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000610' ) $data_identifier = 'HOM05D000610' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 50, 'aar' => (int) 12, 'aag' => (int) 6, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 13, 'cqu' => (int) 16, 'bca' => (int) 36, 'bol' => (int) 21, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 11, 'ccan' => (int) 25, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 23, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 11, 'gra' => (int) 3, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 15, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310770' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ), 'gf_id' => 'HOM05D000610', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000610' ), 'data_identifier' => 'HOM05D000610', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ) $gf_id = 'HOM05D000610' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000610' ) $data_identifier = 'HOM05D000610' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 50, 'aar' => (int) 12, 'aag' => (int) 6, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 13, 'cqu' => (int) 16, 'bca' => (int) 36, 'bol' => (int) 21, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 11, 'ccan' => (int) 25, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 23, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 11, 'gra' => (int) 3, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 15, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310770' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ), 'gf_id' => 'HOM05D000610', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000610' ), 'data_identifier' => 'HOM05D000610', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ) $gf_id = 'HOM05D000610' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000610' ) $data_identifier = 'HOM05D000610' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 50, 'aar' => (int) 12, 'aag' => (int) 6, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 13, 'cqu' => (int) 16, 'bca' => (int) 36, 'bol' => (int) 21, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 11, 'ccan' => (int) 25, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 23, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 11, 'gra' => (int) 3, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 15, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310770' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ), 'gf_id' => 'HOM05D000610', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000610' ), 'data_identifier' => 'HOM05D000610', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ) $gf_id = 'HOM05D000610' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000610' ) $data_identifier = 'HOM05D000610' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 50, 'aar' => (int) 12, 'aag' => (int) 6, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 13, 'cqu' => (int) 16, 'bca' => (int) 36, 'bol' => (int) 21, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 11, 'ccan' => (int) 25, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 23, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 11, 'gra' => (int) 3, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 15, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310770' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ), 'gf_id' => 'HOM05D000610', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000610' ), 'data_identifier' => 'HOM05D000610', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ) $gf_id = 'HOM05D000610' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000610' ) $data_identifier = 'HOM05D000610' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 50, 'aar' => (int) 12, 'aag' => (int) 6, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 13, 'cqu' => (int) 16, 'bca' => (int) 36, 'bol' => (int) 21, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 11, 'ccan' => (int) 25, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 23, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 11, 'gra' => (int) 3, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 15, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310770' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ), 'gf_id' => 'HOM05D000610', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000610' ), 'data_identifier' => 'HOM05D000610', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ) $gf_id = 'HOM05D000610' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000610' ) $data_identifier = 'HOM05D000610' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 50, 'aar' => (int) 12, 'aag' => (int) 6, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 13, 'cqu' => (int) 16, 'bca' => (int) 36, 'bol' => (int) 21, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 11, 'ccan' => (int) 25, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 23, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 11, 'gra' => (int) 3, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 15, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310770' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ), 'gf_id' => 'HOM05D000610', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000610' ), 'data_identifier' => 'HOM05D000610', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ) $gf_id = 'HOM05D000610' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000610' ) $data_identifier = 'HOM05D000610' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 50, 'aar' => (int) 12, 'aag' => (int) 6, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 13, 'cqu' => (int) 16, 'bca' => (int) 36, 'bol' => (int) 21, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 11, 'ccan' => (int) 25, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 23, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 11, 'gra' => (int) 3, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 15, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310770' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ), 'gf_id' => 'HOM05D000610', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000610' ), 'data_identifier' => 'HOM05D000610', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ) $gf_id = 'HOM05D000610' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000610' ) $data_identifier = 'HOM05D000610' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 50, 'aar' => (int) 12, 'aag' => (int) 6, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 13, 'cqu' => (int) 16, 'bca' => (int) 36, 'bol' => (int) 21, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 11, 'ccan' => (int) 25, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 23, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 11, 'gra' => (int) 3, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 15, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310770' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ), 'gf_id' => 'HOM05D000610', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000610' ), 'data_identifier' => 'HOM05D000610', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ) $gf_id = 'HOM05D000610' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000610' ) $data_identifier = 'HOM05D000610' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 50, 'aar' => (int) 12, 'aag' => (int) 6, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 13, 'cqu' => (int) 16, 'bca' => (int) 36, 'bol' => (int) 21, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 11, 'ccan' => (int) 25, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 23, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 11, 'gra' => (int) 3, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 15, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310770' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ), 'gf_id' => 'HOM05D000610', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000610' ), 'data_identifier' => 'HOM05D000610', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ) $gf_id = 'HOM05D000610' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000610' ) $data_identifier = 'HOM05D000610' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 50, 'aar' => (int) 12, 'aag' => (int) 6, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 13, 'cqu' => (int) 16, 'bca' => (int) 36, 'bol' => (int) 21, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 11, 'ccan' => (int) 25, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 23, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 11, 'gra' => (int) 3, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 15, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310770' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ), 'gf_id' => 'HOM05D000610', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000610' ), 'data_identifier' => 'HOM05D000610', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ) $gf_id = 'HOM05D000610' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000610' ) $data_identifier = 'HOM05D000610' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 50, 'aar' => (int) 12, 'aag' => (int) 6, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 13, 'cqu' => (int) 16, 'bca' => (int) 36, 'bol' => (int) 21, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 11, 'ccan' => (int) 25, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 23, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 11, 'gra' => (int) 3, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 15, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310770' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ), 'gf_id' => 'HOM05D000610', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000610' ), 'data_identifier' => 'HOM05D000610', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ) $gf_id = 'HOM05D000610' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000610' ) $data_identifier = 'HOM05D000610' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 50, 'aar' => (int) 12, 'aag' => (int) 6, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 13, 'cqu' => (int) 16, 'bca' => (int) 36, 'bol' => (int) 21, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 11, 'ccan' => (int) 25, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 23, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 11, 'gra' => (int) 3, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 15, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310770' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ), 'gf_id' => 'HOM05D000610', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000610' ), 'data_identifier' => 'HOM05D000610', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ) $gf_id = 'HOM05D000610' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000610' ) $data_identifier = 'HOM05D000610' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 50, 'aar' => (int) 12, 'aag' => (int) 6, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 13, 'cqu' => (int) 16, 'bca' => (int) 36, 'bol' => (int) 21, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 11, 'ccan' => (int) 25, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 23, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 11, 'gra' => (int) 3, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 15, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310770' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ), 'gf_id' => 'HOM05D000610', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000610' ), 'data_identifier' => 'HOM05D000610', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ) $gf_id = 'HOM05D000610' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000610' ) $data_identifier = 'HOM05D000610' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 50, 'aar' => (int) 12, 'aag' => (int) 6, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 13, 'cqu' => (int) 16, 'bca' => (int) 36, 'bol' => (int) 21, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 11, 'ccan' => (int) 25, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 23, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 11, 'gra' => (int) 3, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 15, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310770' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ), 'gf_id' => 'HOM05D000610', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000610' ), 'data_identifier' => 'HOM05D000610', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ) $gf_id = 'HOM05D000610' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000610' ) $data_identifier = 'HOM05D000610' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 50, 'aar' => (int) 12, 'aag' => (int) 6, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 13, 'cqu' => (int) 16, 'bca' => (int) 36, 'bol' => (int) 21, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 11, 'ccan' => (int) 25, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 23, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 11, 'gra' => (int) 3, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 15, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310770' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ), 'gf_id' => 'HOM05D000610', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000610' ), 'data_identifier' => 'HOM05D000610', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ) $gf_id = 'HOM05D000610' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000610' ) $data_identifier = 'HOM05D000610' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 50, 'aar' => (int) 12, 'aag' => (int) 6, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 13, 'cqu' => (int) 16, 'bca' => (int) 36, 'bol' => (int) 21, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 11, 'ccan' => (int) 25, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 23, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 11, 'gra' => (int) 3, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 15, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310770' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ), 'gf_id' => 'HOM05D000610', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000610' ), 'data_identifier' => 'HOM05D000610', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ) $gf_id = 'HOM05D000610' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000610' ) $data_identifier = 'HOM05D000610' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 50, 'aar' => (int) 12, 'aag' => (int) 6, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 13, 'cqu' => (int) 16, 'bca' => (int) 36, 'bol' => (int) 21, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 11, 'ccan' => (int) 25, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 23, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 11, 'gra' => (int) 3, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 15, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310770' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ), 'gf_id' => 'HOM05D000610', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000610' ), 'data_identifier' => 'HOM05D000610', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ) $gf_id = 'HOM05D000610' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000610' ) $data_identifier = 'HOM05D000610' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 50, 'aar' => (int) 12, 'aag' => (int) 6, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 13, 'cqu' => (int) 16, 'bca' => (int) 36, 'bol' => (int) 21, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 11, 'ccan' => (int) 25, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 23, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 11, 'gra' => (int) 3, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 15, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310770' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ), 'gf_id' => 'HOM05D000610', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000610' ), 'data_identifier' => 'HOM05D000610', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ) $gf_id = 'HOM05D000610' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000610' ) $data_identifier = 'HOM05D000610' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 50, 'aar' => (int) 12, 'aag' => (int) 6, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 13, 'cqu' => (int) 16, 'bca' => (int) 36, 'bol' => (int) 21, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 11, 'ccan' => (int) 25, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 23, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 11, 'gra' => (int) 3, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 15, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310770' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ), 'gf_id' => 'HOM05D000610', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000610' ), 'data_identifier' => 'HOM05D000610', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ) $gf_id = 'HOM05D000610' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000610' ) $data_identifier = 'HOM05D000610' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 50, 'aar' => (int) 12, 'aag' => (int) 6, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 13, 'cqu' => (int) 16, 'bca' => (int) 36, 'bol' => (int) 21, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 11, 'ccan' => (int) 25, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 23, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 11, 'gra' => (int) 3, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 15, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310770' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ), 'gf_id' => 'HOM05D000610', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000610' ), 'data_identifier' => 'HOM05D000610', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ) $gf_id = 'HOM05D000610' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000610' ) $data_identifier = 'HOM05D000610' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 50, 'aar' => (int) 12, 'aag' => (int) 6, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 13, 'cqu' => (int) 16, 'bca' => (int) 36, 'bol' => (int) 21, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 11, 'ccan' => (int) 25, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 23, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 11, 'gra' => (int) 3, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 15, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310770' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ), 'gf_id' => 'HOM05D000610', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000610' ), 'data_identifier' => 'HOM05D000610', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ) $gf_id = 'HOM05D000610' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000610' ) $data_identifier = 'HOM05D000610' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 50, 'aar' => (int) 12, 'aag' => (int) 6, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 13, 'cqu' => (int) 16, 'bca' => (int) 36, 'bol' => (int) 21, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 11, 'ccan' => (int) 25, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 23, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 11, 'gra' => (int) 3, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 15, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310770' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ), 'gf_id' => 'HOM05D000610', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000610' ), 'data_identifier' => 'HOM05D000610', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ) $gf_id = 'HOM05D000610' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000610' ) $data_identifier = 'HOM05D000610' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 50, 'aar' => (int) 12, 'aag' => (int) 6, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 13, 'cqu' => (int) 16, 'bca' => (int) 36, 'bol' => (int) 21, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 11, 'ccan' => (int) 25, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 23, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 11, 'gra' => (int) 3, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 15, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310770' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ), 'gf_id' => 'HOM05D000610', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000610' ), 'data_identifier' => 'HOM05D000610', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ) $gf_id = 'HOM05D000610' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000610' ) $data_identifier = 'HOM05D000610' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 50, 'aar' => (int) 12, 'aag' => (int) 6, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 13, 'cqu' => (int) 16, 'bca' => (int) 36, 'bol' => (int) 21, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 11, 'ccan' => (int) 25, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 23, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 11, 'gra' => (int) 3, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 15, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310770' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ), 'gf_id' => 'HOM05D000610', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000610' ), 'data_identifier' => 'HOM05D000610', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ) $gf_id = 'HOM05D000610' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000610' ) $data_identifier = 'HOM05D000610' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 50, 'aar' => (int) 12, 'aag' => (int) 6, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 13, 'cqu' => (int) 16, 'bca' => (int) 36, 'bol' => (int) 21, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 11, 'ccan' => (int) 25, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 23, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 11, 'gra' => (int) 3, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 15, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310770' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ), 'gf_id' => 'HOM05D000610', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000610' ), 'data_identifier' => 'HOM05D000610', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ) $gf_id = 'HOM05D000610' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000610' ) $data_identifier = 'HOM05D000610' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 50, 'aar' => (int) 12, 'aag' => (int) 6, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 13, 'cqu' => (int) 16, 'bca' => (int) 36, 'bol' => (int) 21, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 11, 'ccan' => (int) 25, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 23, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 11, 'gra' => (int) 3, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 15, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310770' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ), 'gf_id' => 'HOM05D000610', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000610' ), 'data_identifier' => 'HOM05D000610', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ) $gf_id = 'HOM05D000610' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000610' ) $data_identifier = 'HOM05D000610' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 50, 'aar' => (int) 12, 'aag' => (int) 6, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 13, 'cqu' => (int) 16, 'bca' => (int) 36, 'bol' => (int) 21, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 11, 'ccan' => (int) 25, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 23, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 11, 'gra' => (int) 3, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 15, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310770' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ), 'gf_id' => 'HOM05D000610', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000610' ), 'data_identifier' => 'HOM05D000610', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ) $gf_id = 'HOM05D000610' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000610' ) $data_identifier = 'HOM05D000610' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 50, 'aar' => (int) 12, 'aag' => (int) 6, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 13, 'cqu' => (int) 16, 'bca' => (int) 36, 'bol' => (int) 21, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 11, 'ccan' => (int) 25, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 23, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 11, 'gra' => (int) 3, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 15, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310770' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ), 'gf_id' => 'HOM05D000610', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000610' ), 'data_identifier' => 'HOM05D000610', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ) $gf_id = 'HOM05D000610' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000610' ) $data_identifier = 'HOM05D000610' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 50, 'aar' => (int) 12, 'aag' => (int) 6, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 13, 'cqu' => (int) 16, 'bca' => (int) 36, 'bol' => (int) 21, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 11, 'ccan' => (int) 25, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 23, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 11, 'gra' => (int) 3, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 15, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310770' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ), 'gf_id' => 'HOM05D000610', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000610' ), 'data_identifier' => 'HOM05D000610', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ) $gf_id = 'HOM05D000610' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000610' ) $data_identifier = 'HOM05D000610' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 50, 'aar' => (int) 12, 'aag' => (int) 6, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 13, 'cqu' => (int) 16, 'bca' => (int) 36, 'bol' => (int) 21, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 11, 'ccan' => (int) 25, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 23, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 11, 'gra' => (int) 3, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 15, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310770' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ), 'gf_id' => 'HOM05D000610', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000610' ), 'data_identifier' => 'HOM05D000610', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ) $gf_id = 'HOM05D000610' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000610' ) $data_identifier = 'HOM05D000610' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 50, 'aar' => (int) 12, 'aag' => (int) 6, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 13, 'cqu' => (int) 16, 'bca' => (int) 36, 'bol' => (int) 21, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 11, 'ccan' => (int) 25, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 23, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 11, 'gra' => (int) 3, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 15, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310770' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ), 'gf_id' => 'HOM05D000610', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000610' ), 'data_identifier' => 'HOM05D000610', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ) $gf_id = 'HOM05D000610' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000610' ) $data_identifier = 'HOM05D000610' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 50, 'aar' => (int) 12, 'aag' => (int) 6, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 13, 'cqu' => (int) 16, 'bca' => (int) 36, 'bol' => (int) 21, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 11, 'ccan' => (int) 25, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 23, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 11, 'gra' => (int) 3, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 15, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310770' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ), 'gf_id' => 'HOM05D000610', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000610' ), 'data_identifier' => 'HOM05D000610', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ) $gf_id = 'HOM05D000610' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000610' ) $data_identifier = 'HOM05D000610' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 50, 'aar' => (int) 12, 'aag' => (int) 6, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 13, 'cqu' => (int) 16, 'bca' => (int) 36, 'bol' => (int) 21, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 11, 'ccan' => (int) 25, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 23, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 11, 'gra' => (int) 3, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 15, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310770' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ), 'gf_id' => 'HOM05D000610', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000610' ), 'data_identifier' => 'HOM05D000610', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ) $gf_id = 'HOM05D000610' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000610' ) $data_identifier = 'HOM05D000610' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 50, 'aar' => (int) 12, 'aag' => (int) 6, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 13, 'cqu' => (int) 16, 'bca' => (int) 36, 'bol' => (int) 21, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 11, 'ccan' => (int) 25, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 23, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 11, 'gra' => (int) 3, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 15, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310770' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ), 'gf_id' => 'HOM05D000610', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000610' ), 'data_identifier' => 'HOM05D000610', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ) $gf_id = 'HOM05D000610' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000610' ) $data_identifier = 'HOM05D000610' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 50, 'aar' => (int) 12, 'aag' => (int) 6, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 13, 'cqu' => (int) 16, 'bca' => (int) 36, 'bol' => (int) 21, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 11, 'ccan' => (int) 25, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 23, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 11, 'gra' => (int) 3, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 15, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310770' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ), 'gf_id' => 'HOM05D000610', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000610' ), 'data_identifier' => 'HOM05D000610', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000610', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25770' => 'bna', 'A01p25790' => 'bna', 'A01p27720' => 'bna', 'A01p27790' => 'bna', 'A01p27800' => 'bna', 'A01p27820' => 'bna', 'A01p27830' => 'bna', 'A01p27880' => 'bna', 'A01p27890' => 'bna', 'A01p27900' => 'bna', 'A01p27910' => 'bna', 'A01p27920' => 'bna', 'A01p27930' => 'bna', 'A03p23380' => 'bna', 'A03p47290' => 'bna', 'A03p47300' => 'bna', 'A03p47310' => 'bna', 'A03p47320' => 'bna', 'A03p47340' => 'bna', 'A03p47360' => 'bna', 'A03p47370' => 'bna', 'A03p47380' => 'bna', 'A03p47410' => 'bna', 'A03p47430' => 'bna', 'A03p47440' => 'bna', 'A06p19860' => 'bna', 'A06p19870' => 'bna', 'A06p19880' => 'bna', 'A06p27280' => 'bna', 'A07p07820' => 'bna', 'Aa31LG11G1760' => 'aar', 'Aa31LG11G1770' => 'aar', 'Aa31LG11G3250' => 'aar', 'Aa31LG1G23710' => 'aar', 'Aa31LG4G16420' => 'aar', 'Aa31LG4G16430' => 'aar', 'Aa31LG4G16440' => 'aar', 'Aa31LG6G9530' => 'aar', 'Aa31LG6G9540' => 'aar', 'Aa31LG6G9580' => 'aar', 'Aa31LG6G9610' => 'aar', 'Aa31sc767G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4195' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1400' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.769' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2667' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.787' => 'aag', 'Actinidia05480' => 'ach', 'Actinidia09318' => 'ach', 'Actinidia09319' => 'ach', 'Actinidia09320' => 'ach', 'Actinidia19051' => 'ach', 'Actinidia19053' => 'ach', 'Actinidia34983' => 'ach', 'Actinidia34985' => 'ach', 'Actinidia39216' => 'ach', 'Ah.01g002860' => 'amhyb', 'Ah.01g002870' => 'amhyb', 'Ah.04g151590' => 'amhyb', 'Ah.11g048600' => 'amhyb', 'AL4G40000' => 'aly', 'AL5G27000' => 'aly', 'AL5G27010' => 'aly', 'AL5G27020' => 'aly', 'AL5G27040' => 'aly', 'AL5G27050' => 'aly', 'AL5G27060' => 'aly', 'AL5G27070' => 'aly', 'AL8G38410' => 'aly', 'AL8G38420' => 'aly', 'AL8G38450' => 'aly', 'AL8G38460' => 'aly', 'AL8G38490' => 'aly', 'AL8G38500' => 'aly', 'Aqoxy1G00231' => 'aox', 'Aqoxy3G00715' => 'aox', 'Aqoxy3G00716' => 'aox', 'Aqoxy3G02228' => 'aox', 'Aqoxy3G02229' => 'aox', 'Aqoxy3G02375' => 'aox', 'Aqoxy3G02376' => 'aox', 'Aqoxy3G04169' => 'aox', 'Aqoxy3G04276' => 'aox', 'Aqoxy7G00820' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0FA8VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10H3D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.19R0N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZR96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50CUSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5A6QCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.624G49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BN4Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7JS874' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880Q0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89ZP41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FMR35J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HBIL5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1ATNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7V4PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LF6SQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0XA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9U3S4' => 'arhy', 'AT2G41700' => 'ath', 'AT3G47730' => 'ath', 'AT3G47740' => 'ath', 'AT3G47750' => 'ath', 'AT3G47760' => 'ath', 'AT3G47770' => 'ath', 'AT3G47780' => 'ath', 'AT3G47790' => 'ath', 'AT5G61690' => 'ath', 'AT5G61700' => 'ath', 'AT5G61730' => 'ath', 'AT5G61740' => 'ath', 'ATR0188G019' => 'atr', 'ATR1120G011' => 'atr', 'ATR1120G081' => 'atr', 'ATR1120G138' => 'atr', 'ATR1120G186' => 'atr', 'Atru.chr1.1122' => 'acertr', 'Atru.chr1.1123' => 'acertr', 'Atru.chr5.111' => 'acertr', 'Atru.chr9.2291' => 'acertr', 'Atru.chr9.2292' => 'acertr', 'Atru.chr9.2293' => 'acertr', 'Atru.chr9.2295' => 'acertr', 'Atru.chr9.2296' => 'acertr', 'Atru.chr9.2297' => 'acertr', 'Atru.chr9.2298_Atru.chr9.2299' => 'acertr', 'Atru.chr9.2300' => 'acertr', 'Atru.chr9.2468' => 'acertr', 'Atru.chr9.2469' => 'acertr', 'AUR62008377' => 'cqu', 'AUR62008378' => 'cqu', 'AUR62008379' => 'cqu', 'AUR62008380' => 'cqu', 'AUR62021719' => 'cqu', 'AUR62021720' => 'cqu', 'AUR62021721' => 'cqu', 'AUR62021722' => 'cqu', 'AUR62024461' => 'cqu', 'AUR62024982' => 'cqu', 'AUR62024983' => 'cqu', 'AUR62024989' => 'cqu', 'AUR62026051' => 'cqu', 'AUR62039631' => 'cqu', 'AUR62039634' => 'cqu', 'AUR62039635' => 'cqu', 'BcaB01g00879' => 'bca', 'BcaB01g00881' => 'bca', 'BcaB01g00884' => 'bca', 'BcaB02g10690' => 'bca', 'BcaB05g23069' => 'bca', 'BcaB05g23070' => 'bca', 'BcaB07g31163' => 'bca', 'BcaB07g31164' => 'bca', 'BcaC01g01777' => 'bca', 'BcaC01g01778' => 'bca', 'BcaC01g01779' => 'bca', 'BcaC01g02291' => 'bca', 'BcaC01g05322' => 'bca', 'BcaC03g17511' => 'bca', 'BcaC05g28377' => 'bca', 'BcaC06g33131' => 'bca', 'BcaC06g33132' => 'bca', 'BcaC06g33135' => 'bca', 'BcaC06g33136' => 'bca', 'BcaC06g33249' => 'bca', 'BcaC06g33250' => 'bca', 'BcaC06g33252' => 'bca', 'BcaC06g33253' => 'bca', 'BcaC06g33254' => 'bca', 'BcaC06g35717' => 'bca', 'BcaC09g49535' => 'bca', 'BcaC09g49536' => 'bca', 'BcaC09g49537' => 'bca', 'BcaC09g49815' => 'bca', 'BcaC09g49816' => 'bca', 'BcaC09g49817' => 'bca', 'BcaNung06539' => 'bca', 'BcaNung06541' => 'bca', 'BcaNung06542' => 'bca', 'BcaNung07040' => 'bca', 'BcaNung07041' => 'bca', 'BolC1t03195H' => 'bol', 'BolC1t03196H' => 'bol', 'BolC1t03197H' => 'bol', 'BolC1t03198H' => 'bol', 'BolC1t03501H' => 'bol', 'BolC1t03502H' => 'bol', 'BolC1t03507H' => 'bol', 'BolC3t15161H' => 'bol', 'BolC3t18971H' => 'bol', 'BolC3t19492H' => 'bol', 'BolC3t19494H' => 'bol', 'BolC3t19495H' => 'bol', 'BolC3t19496H' => 'bol', 'BolC5t29560H' => 'bol', 'BolC5t29564H' => 'bol', 'BolC5t33179H' => 'bol', 'BolC7t41646H' => 'bol', 'BolC7t45063H' => 'bol', 'BolC7t45064H' => 'bol', 'BolC7t45066H' => 'bol', 'BolC7t45067H' => 'bol', 'BraA01t02493Z' => 'bra', 'BraA01t02909Z' => 'bra', 'BraA01t02915Z' => 'bra', 'BraA01t02916Z' => 'bra', 'BraA01t02918Z' => 'bra', 'BraA01t02929Z' => 'bra', 'BraA01t02930Z' => 'bra', 'BraA03t11555Z' => 'bra', 'BraA03t13857Z' => 'bra', 'BraA03t13858Z' => 'bra', 'BraA03t13860Z' => 'bra', 'BraA03t13861Z' => 'bra', 'BraA06t25069Z' => 'bra', 'BraA06t25070Z' => 'bra', 'BraA06t25071Z' => 'bra', 'BraA06t25669Z' => 'bra', 'BraA07t28572Z' => 'bra', 'C01p32590' => 'bna', 'C01p32600' => 'bna', 'C01p32610' => 'bna', 'C01p32620' => 'bna', 'C01p35440' => 'bna', 'C01p35480' => 'bna', 'C02p54740' => 'bna', 'C03p27900' => 'bna', 'C03p66980' => 'bna', 'C03p71950' => 'bna', 'C03p71960' => 'bna', 'C03p71970' => 'bna', 'C03p71980' => 'bna', 'C05p08070' => 'bna', 'C05p08110' => 'bna', 'C05p44550' => 'bna', 'C07p11720' => 'bna', 'C07p45420' => 'bna', 'C07p45430' => 'bna', 'C09p35350' => 'bna', 'CAN.G1305.1' => 'can', 'CAN.G1305.3' => 'can', 'CAN.G1711.16' => 'can', 'CAN.G1711.17' => 'can', 'CAN.G2.16' => 'can', 'CAN.G628.29' => 'can', 'CAN.G628.30' => 'can', 'CAN.G628.31' => 'can', 'CAN.G628.32' => 'can', 'CAN.G676.30' => 'can', 'CANSAT11G1161' => 'cansat', 'CANSAT11G2635' => 'cansat', 'CANSAT35G0242' => 'cansat', 'CANSAT54G0235' => 'cansat', 'CANSAT80G0453' => 'cansat', 'CANSAT80G0609' => 'cansat', 'CANSAT80G1028' => 'cansat', 'CANSAT80G1723' => 'cansat', 'CANSAT80G2031' => 'cansat', 'CANSAT80G2124' => 'cansat', 'CARHR136790' => 'chi', 'CARHR156410' => 'chi', 'CARHR156420' => 'chi', 'CARHR156430' => 'chi', 'CARHR156440' => 'chi', 'CARHR156450' => 'chi', 'CARHR156460' => 'chi', 'CARHR156470' => 'chi', 'CARHR275490' => 'chi', 'CARHR275500' => 'chi', 'Carub.0004s2397' => 'cru', 'Carub.0005s1386' => 'cru', 'Carub.0005s1387' => 'cru', 'Carub.0005s1388' => 'cru', 'Carub.0005s1389' => 'cru', 'Carub.0005s1390' => 'cru', 'Carub.0008s2239' => 'cru', 'Carub.0008s2242' => 'cru', 'Carub.0008s2243' => 'cru', 'Carub.0172s0001' => 'cru', 'Carub.0172s0002' => 'cru', 'Ca_08444_v3' => 'car', 'Ca_08446_v3' => 'car', 'Ca_13681_v3' => 'car', 'Ca_13682_v3' => 'car', 'Ca_15462_v3' => 'car', 'Ca_21838_v3' => 'car', 'Ca_25472_v3' => 'car', 'Ca_28734_v3' => 'car', 'Ca_31125_v3' => 'car', 'CBR_g12441' => 'cbr', 'CBR_g12446' => 'cbr', 'CBR_g19522' => 'cbr', 'CBR_g19654' => 'cbr', 'CBR_g21052' => 'cbr', 'CBR_g29620' => 'cbr', 'CBR_g38217' => 'cbr', 'CBR_g42101' => 'cbr', 'CBR_g44946' => 'cbr', 'CBR_g82059' => 'cbr', 'CBR_g8373' => 'cbr', 'Cc00_g21610' => 'ccan', 'Cc00_g21620' => 'ccan', 'Cc00_g22610' => 'ccan', 'Cc00_g22620' => 'ccan', 'Cc00_g26160' => 'ccan', 'Cc00_g27230' => 'ccan', 'Cc00_g34200' => 'ccan', 'Cc00_g35360' => 'ccan', 'Cc04_g15230' => 'ccan', 'Cc04_g15240' => 'ccan', 'Cc04_g15250' => 'ccan', 'Cc04_g15260' => 'ccan', 'Cc04_g15270' => 'ccan', 'Cc04_g15280' => 'ccan', 'Cc04_g15290' => 'ccan', 'Cc04_g15300' => 'ccan', 'Cc04_g15310' => 'ccan', 'Cc04_g15320' => 'ccan', 'Cc04_g15330' => 'ccan', 'Cc04_g15350' => 'ccan', 'Cc04_g17200' => 'ccan', 'Cc04_g17210' => 'ccan', 'Cc04_g17220' => 'ccan', 'Cc04_g17230' => 'ccan', 'Cc06_g17650' => 'ccan', 'CDE05G0129' => 'cde', 'CDE05G0896' => 'cde', 'CDE05G1153' => 'cde', 'CDE05G1297' => 'cde', 'CDE05G2047' => 'cde', 'CDE05G2488' => 'cde', 'CDE05G2711' => 'cde', 'Cfa016807' => 'cfa', 'Cfa018971' => 'cfa', 'Cfa018972' => 'cfa', 'Cfa018973' => 'cfa', 'Cfa018974' => 'cfa', 'Ciclev10004128m.g' => 'ccl', 'Ciclev10018720m.g' => 'ccl', 'Ciclev10018739m.g' => 'ccl', 'CiPaw.09G038900' => 'cil', 'CiPaw.11G039900' => 'cil', 'CiPaw.12G015500' => 'cil', 'CiPaw.12G015600' => 'cil', 'ClCG01G014460' => 'cla', 'ClCG04G003340' => 'cla', 'ClCG04G003360' => 'cla', 'ClCG04G003370' => 'cla', 'ClCG04G003390' => 'cla', 'ClCG06G016320' => 'cla', 'ClCG06G016330' => 'cla', 'COL.COLO4_08235' => 'col', 'COL.COLO4_08236' => 'col', 'COL.COLO4_14037' => 'col', 'COL.COLO4_14040' => 'col', 'Cpa.g.sc107.109' => 'cpa', 'Cpa.g.sc107.110' => 'cpa', 'Cpa.g.sc224.6' => 'cpa', 'Cpa.g.sc224.7' => 'cpa', 'Cpa.g.sc224.8' => 'cpa', 'Cpa.g.sc388.1' => 'cpa', 'Cpa.g.sc388.2' => 'cpa', 'Cre02.g077951' => 'cre', 'Cre03.g151400' => 'cre', 'Cre03.g191350' => 'cre', 'Cre14.g613950' => 'cre', 'Cre14.g618400' => 'cre', 'Cre16.g674500' => 'cre', 'Cre17.g721000' => 'cre', 'CsaV3_1G002200' => 'csa', 'CsaV3_1G002210' => 'csa', 'CsaV3_1G007850' => 'csa', 'CsaV3_4G011860' => 'csa', 'CSS0003889' => 'camsi', 'CSS0005355' => 'camsi', 'CSS0006351' => 'camsi', 'CSS0006450' => 'camsi', 'CSS0007597' => 'camsi', 'CSS0007898' => 'camsi', 'CSS0009051' => 'camsi', 'CSS0013319' => 'camsi', 'CSS0013819' => 'camsi', 'CSS0015811' => 'camsi', 'CSS0021264' => 'camsi', 'CSS0021284' => 'camsi', 'CSS0021621' => 'camsi', 'CSS0022905' => 'camsi', 'CSS0024043' => 'camsi', 'CSS0025360' => 'camsi', 'CSS0027985' => 'camsi', 'CSS0028956' => 'camsi', 'CSS0031516' => 'camsi', 'CSS0033185' => 'camsi', 'CSS0034491' => 'camsi', 'CSS0036988' => 'camsi', 'CSS0042204' => 'camsi', 'DCAR_016537' => 'dca', 'DCAR_020494' => 'dca', 'DCAR_020495' => 'dca', 'DCAR_021533' => 'dca', 'Dinv18665' => 'din', 'Dinv38678' => 'din', 'Dinv38679' => 'din', 'Dinv38680' => 'din', 'Dinv38681' => 'din', 'Dinv38682' => 'din', 'Dinv39616' => 'din', 'Duzib093G2237' => 'dzi', 'Duzib128G1628' => 'dzi', 'Duzib205G1230' => 'dzi', 'Duzib205G1514' => 'dzi', 'ECA247G0348' => 'eca', 'ECA247G0905' => 'eca', 'ECA247G0979' => 'eca', 'ECA247G1010' => 'eca', 'ECA247G1963' => 'eca', 'ECA247G2849' => 'eca', 'ECA247G3032' => 'eca', 'EL10Ac3g07101' => 'bvu', 'EL10Ac5g10963' => 'bvu', 'EL10Ac5g10964' => 'bvu', 'EL10Ac5g10966' => 'bvu', 'EL10Ac5g10967' => 'bvu', 'EL10Ac9g22511' => 'bvu', 'EL10Ac9g22512' => 'bvu', 'EL10Ac9g22633' => 'bvu', 'Eucgr.A02339' => 'egr', 'Eucgr.K02454' => 'egr', 'Eucgr.K02457' => 'egr', 'Eucgr.K02458' => 'egr', 'Eucgr.K02460' => 'egr', 'FAN02G4008' => 'fan', 'FAN04G2617' => 'fan', 'FAN08G0119' => 'fan', 'FAN08G1292' => 'fan', 'FAN08G1640' => 'fan', 'FAN08G2616' => 'fan', 'FAN09G1277' => 'fan', 'FAN11G2326' => 'fan', 'FAN12G3841' => 'fan', 'FAN13G0125' => 'fan', 'FAN13G1976' => 'fan', 'FAN13G2733' => 'fan', 'FAN13G2739' => 'fan', 'FAN14G3175' => 'fan', 'FAN16G3183' => 'fan', 'FAN16G3653' => 'fan', 'FAN18G0077' => 'fan', 'FAN18G0774' => 'fan', 'FAN18G2687' => 'fan', 'FAN18G4496' => 'fan', 'FAN21G4023' => 'fan', 'FAN25G1813' => 'fan', 'FvH4_1g21380' => 'fve', 'FvH4_2g14520' => 'fve', 'FvH4_3g33610' => 'fve', 'FvH4_5g15270' => 'fve', 'FvH4_5g15280' => 'fve', 'FvH4_5g17010' => 'fve', 'FvH4_5g17020' => 'fve', 'FvH4_6g24100' => 'fve', 'Glyma.03G048351' => 'gma', 'Glyma.03G136000' => 'gma', 'Glyma.04G172900' => 'gma', 'Glyma.04G173000' => 'gma', 'Glyma.05G028500' => 'gma', 'Glyma.06G191300' => 'gma', 'Glyma.06G191400' => 'gma', 'Glyma.07G094000' => 'gma', 'Glyma.17G098300' => 'gma', 'Gohir.A01G131111' => 'ghi', 'Gohir.A11G029711' => 'ghi', 'Gohir.A12G175700' => 'ghi', 'Gohir.A12G175800' => 'ghi', 'Gohir.A12G175966' => 'ghi', 'Gohir.A12G176100' => 'ghi', 'Gohir.D01G120000' => 'ghi', 'Gohir.D11G033100' => 'ghi', 'Gohir.D12G178900' => 'ghi', 'Gohir.D12G179080' => 'ghi', 'Gohir.D12G179160' => 'ghi', 'Gorai.002G146400' => 'gra', 'Gorai.007G035900' => 'gra', 'Gorai.008G191700' => 'gra', 'GSVIVG01008040001' => 'vvi', 'GSVIVG01008042001' => 'vvi', 'GSVIVG01015929001' => 'vvi', 'GSVIVG01025896001' => 'vvi', 'GSVIVG01025902001' => 'vvi', 'GSVIVG01029736001' => 'vvi', 'GSVIVG01029737001' => 'vvi', 'GSVIVG01033258001' => 'vvi', 'GSVIVG01038338001' => 'vvi', 'HanXRQChr02g0042001' => 'han', 'HanXRQChr02g0043111' => 'han', 'HanXRQChr04g0110341' => 'han', 'HanXRQChr10g0296791' => 'han', 'HanXRQChr10g0300621' => 'han', 'Haze_07355' => 'cav', 'Haze_07357' => 'cav', 'Haze_07359' => 'cav', 'Haze_07360' => 'cav', 'Haze_19838' => 'cav', 'Haze_19840' => 'cav', 'Haze_26641' => 'cav', 'Haze_27039' => 'cav', 'Haze_27278' => 'cav', 'Haze_27282' => 'cav', 'Hma1.2p1_0104F.1_g050100' => 'hma', 'Hma1.2p1_0104F.1_g050120' => 'hma', 'Hma1.2p1_0871F.1_g231060' => 'hma', 'Hma1.2p1_0871F.1_g231090' => 'hma', 'Hma1.2p1_0871F.1_g231100' => 'hma', 'Hma1.2p1_1280F.1_g272560' => 'hma', 'Hma1.2p1_1280F.1_g272565' => 'hma', 'Hma1.2p1_1617F.1_g293840' => 'hma', 'Hma1.2p1_1617F.1_g293850' => 'hma', 'Hma1.2p1_1617F.1_g293860' => 'hma', 'HPP92_009726' => 'vpl', 'HPP92_019405' => 'vpl', 'HPP92_019406' => 'vpl', 'HPP92_019408' => 'vpl', 'HPP92_019411' => 'vpl', 'HPP92_019439' => 'vpl', 'HPP92_019440' => 'vpl', 'Hund02663' => 'sun', 'Hund02664' => 'sun', 'Hund08136' => 'sun', 'Hund24698' => 'sun', 'Hund24700' => 'sun', 'Lalb_Chr08g0235851' => 'lal', 'Lalb_Chr08g0235871' => 'lal', 'Lalb_Chr13g0303341' => 'lal', 'Lalb_Chr13g0303351' => 'lal', 'Lalb_Chr13g0303361' => 'lal', 'Lalb_Chr13g0303371' => 'lal', 'Lalb_Chr25g0287161' => 'lal', 'Lj1g0005409' => 'lja', 'Lj1g0007780' => 'lja', 'Lj1g0009392' => 'lja', 'Lj1g0016230' => 'lja', 'Lj1g0024986' => 'lja', 'Lj4g0017083' => 'lja', 'Lj4g0020398' => 'lja', 'Lj5C113G15' => 'lonja', 'Lj5C113T15' => 'lonja', 'Lj5C113T8' => 'lonja', 'Lju124C43G3' => 'lonja', 'Lsat_1_v5_gn_1_10641' => 'lsa', 'Lsat_1_v5_gn_1_11021' => 'lsa', 'Lsat_1_v5_gn_1_11080' => 'lsa', 'Lsat_1_v5_gn_1_11101' => 'lsa', 'Lsat_1_v5_gn_1_11141' => 'lsa', 'Lsat_1_v5_gn_2_38181' => 'lsa', 'Lsat_1_v5_gn_2_88940' => 'lsa', 'Lsat_1_v5_gn_9_30620' => 'lsa', 'Manes.06G095100' => 'mes', 'Manes.06G095200' => 'mes', 'Manes.09G020400' => 'mes', 'Mapoly0041s0065' => 'mpo', 'Mapoly0049s0026' => 'mpo', 'Mapoly0078s0053' => 'mpo', 'Mapoly0101s0011' => 'mpo', 'Mapoly0165s0002' => 'mpo', 'Mapoly0165s0010' => 'mpo', 'MBI01_g12914_MAGBIO' => 'mbi', 'MBI01_g12916_MAGBIO' => 'mbi', 'MBI01_g12917_MAGBIO' => 'mbi', 'MBI01_g12918_MAGBIO' => 'mbi', 'MBI01_g12919_MAGBIO' => 'mbi', 'MBI08_g41216_MAGBIO' => 'mbi', 'MBI19_g13038_MAGBIO' => 'mbi', 'MBI19_g35693_MAGBIO' => 'mbi', 'MBI19_g41433_MAGBIO' => 'mbi', 'MCO09G102' => 'mco', 'MCO14G501' => 'mco', 'MCO16G651' => 'mco', 'MD00G1160200' => 'mdo', 'MD00G1160300' => 'mdo', 'MD06G1189700' => 'mdo', 'MD07G1108200' => 'mdo', 'MD11G1124700' => 'mdo', 'MD12G1079400' => 'mdo', 'MD14G1075500' => 'mdo', 'MD14G1075700' => 'mdo', 'MD14G1196600' => 'mdo', 'Medtr3g099990' => 'mtr', 'Medtr3g437870' => 'mtr', 'Medtr3g437990' => 'mtr', 'Medtr4g108153' => 'mtr', 'Medtr4g108163' => 'mtr', 'Medtr4g108170' => 'mtr', 'Medtr4g108180' => 'mtr', 'Medtr4g108210' => 'mtr', 'Medtr4g108240' => 'mtr', 'Medtr7g091380' => 'mtr', 'MELO3C002200.2' => 'cme', 'MELO3C017159.2' => 'cme', 'MELO3C017160.2' => 'cme', 'MELO3C023103.2' => 'cme', 'Migut.I00139' => 'egut', 'Migut.I00140' => 'egut', 'Migut.I00141' => 'egut', 'Migut.I00142' => 'egut', 'Migut.I00143' => 'egut', 'Migut.I00145' => 'egut', 'Migut.I00149' => 'egut', 'Migut.I00150' => 'egut', 'Migut.J01749' => 'egut', 'MSTRG.11393' => 'ama', 'MSTRG.23035' => 'ama', 'MSTRG.23036' => 'ama', 'MSTRG.23037' => 'ama', 'MSTRG.6422' => 'ama', 'Nitab4.5_0000269g0080' => 'nta', 'Nitab4.5_0000269g0090' => 'nta', 'Nitab4.5_0000269g0100' => 'nta', 'Nitab4.5_0000586g0130' => 'nta', 'Nitab4.5_0000785g0100' => 'nta', 'Nitab4.5_0000785g0120' => 'nta', 'Nitab4.5_0000785g0130' => 'nta', 'Nitab4.5_0001941g0010' => 'nta', 'Nitab4.5_0001941g0020' => 'nta', 'Nitab4.5_0002328g0010' => 'nta', 'Nitab4.5_0004785g0020' => 'nta', 'Nitab4.5_0004785g0030' => 'nta', 'Nitab4.5_0009425g0010' => 'nta', 'Nitab4.5_0009425g0020' => 'nta', 'Nitab4.5_0009425g0030' => 'nta', 'Nitab4.5_0009615g0020' => 'nta', 'Nitab4.5_0010010g0020' => 'nta', 'Nitab4.5_0010767g0010' => 'nta', 'Nitab4.5_0012727g0010' => 'nta', 'Nitab4.5_0012727g0020' => 'nta', 'Nn050s41920' => 'nnu', 'Nn1g00357' => 'nnu', 'Nn1g00358' => 'nnu', 'Nn1g05144' => 'nnu', 'Nn1g05161' => 'nnu', 'Nn2g15963' => 'nnu', 'Nn2g15988' => 'nnu', 'Nn3g17160' => 'nnu', 'Nn4g23079' => 'nnu', 'Nn4g23080' => 'nnu', 'Nn5g28877' => 'nnu', 'Nn6g31616' => 'nnu', 'Nn6g31617' => 'nnu', 'Nn7g36312' => 'nnu', 'Nn7g37891' => 'nnu', 'Oeu006481.1' => 'oeu', 'Oeu011240.2' => 'oeu', 'Oeu023112.1' => 'oeu', 'Oeu060783.1' => 'oeu', 'Oeu060784.1' => 'oeu', 'Os02g0107900' => 'osa', 'Os02g0211000' => 'osa', 'Os06g0589300' => 'osa', 'Os08g0398000' => 'osa', 'Os08g0398300' => 'osa', 'Os08g0398350' => 'osa', 'Os09g0360900' => 'osa', 'Peaxi162Scf00009g00227' => 'pax', 'Peaxi162Scf00009g00228' => 'pax', 'Peaxi162Scf00009g00232' => 'pax', 'Peaxi162Scf00013g00135' => 'pax', 'Peaxi162Scf00013g00137' => 'pax', 'Peaxi162Scf00013g00138' => 'pax', 'Peaxi162Scf00013g00139' => 'pax', 'Peaxi162Scf00130g00325' => 'pax', 'Peaxi162Scf00574g00116' => 'pax', 'Peaxi162Scf00574g00117' => 'pax', 'Peaxi162Scf01289g00012' => 'pax', 'Peaxi162Scf01289g00013' => 'pax', 'Peaxi162Scf01803g00004' => 'pax', 'PGR004G2234' => 'pgr', 'PGR044G0597' => 'pgr', 'PGR044G1350' => 'pgr', 'PGR044G1620' => 'pgr', 'PGR102G1345' => 'pgr', 'PGR142G2374' => 'pgr', 'PGSC0003DMG400033041' => 'stu', 'PGSC0003DMG400033042' => 'stu', 'PGSC0003DMG400033077' => 'stu', 'PGSC0003DMG401024195' => 'stu', 'PGSC0003DMG402018143' => 'stu', 'Phvul.001G131150' => 'pvu', 'Phvul.003G191600' => 'pvu', 'Phvul.009G189300' => 'pvu', 'Phvul.009G189400' => 'pvu', 'Potri.006G049300' => 'ptr', 'Potri.012G069700' => 'ptr', 'Potri.012G069800' => 'ptr', 'Potri.013G123401' => 'ptr', 'Potri.015G063400' => 'ptr', 'Potri.015G063500' => 'ptr', 'Pp3c12_20160' => 'ppa', 'Pp3c14_6070' => 'ppa', 'Pp3c19_7970' => 'ppa', 'Pp3c22_2650' => 'ppa', 'Pp3c4_27650' => 'ppa', 'Pp3c4_7070' => 'ppa', 'Pp3c5_21220' => 'ppa', 'Pp3s30_304' => 'ppa', 'Pp3s32_310' => 'ppa', 'Pp3s34_433' => 'ppa', 'Pp3s42_173' => 'ppa', 'Pp3s58_70' => 'ppa', 'Pp3s915_10' => 'ppa', 'PRCOL_00001457' => 'pco', 'PRCOL_00006093' => 'pco', 'Prupe.5G188400' => 'ppe', 'Prupe.5G188500' => 'ppe', 'Prupe.5G188700' => 'ppe', 'Prupe.5G229500' => 'ppe', 'Prupe.5G229600' => 'ppe', 'Prupe.6G093200' => 'ppe', 'Prupe.7G058100' => 'ppe', 'Psat0s253g0040' => 'psa', 'Psat0s3007g0040' => 'psa', 'Psat2g105960' => 'psa', 'Psat3g072960' => 'psa', 'Psat4g052280' => 'psa', 'Psat4g052880' => 'psa', 'Psat5g190640' => 'psa', 'Psat5g190680' => 'psa', 'Psat6g040440' => 'psa', 'Psat6g119800' => 'psa', 'PSO017G1322' => 'pso', 'PSO017G5214' => 'pso', 'PSO104G0223' => 'pso', 'PSO170G1857' => 'pso', 'PSO384G3904' => 'pso', 'PSO478G2242' => 'pso', 'PSO478G2730' => 'pso', 'PSO591G0032' => 'pso', 'PSO832G1001' => 'pso', 'PSO832G1930' => 'pso', 'PSO832G3636' => 'pso', 'QL08p006538' => 'qlo', 'QL10p015990' => 'qlo', 'QL10p015995' => 'qlo', 'QL10p016023' => 'qlo', 'QL10p016051' => 'qlo', 'QL10p016072' => 'qlo', 'QL10p016079' => 'qlo', 'QL10p016092' => 'qlo', 'QL10p016116' => 'qlo', 'QL10p016142' => 'qlo', 'QL12p013646' => 'qlo', 'QL93p0043_0039' => 'qlo', 'QL93p0043_0060' => 'qlo', 'QL93p0043_0065' => 'qlo', 'QL93p0043_0077' => 'qlo', 'RcHm_v2.0_Chr2g0168501' => 'rch', 'RcHm_v2.0_Chr3g0482761' => 'rch', 'RcHm_v2.0_Chr3g0487131' => 'rch', 'RcHm_v2.0_Chr5g0061021' => 'rch', 'RcHm_v2.0_Chr5g0061621' => 'rch', 'RcHm_v2.0_Chr7g0178831' => 'rch', 'RcHm_v2.0_Chr7g0178841' => 'rch', 'RcHm_v2.0_Chr7g0180781' => 'rch', 'RcHm_v2.0_Chr7g0180791' => 'rch', 'RcHm_v2.0_Chr7g0180811' => 'rch', 'Rhsim03G0027100' => 'rsi', 'Rhsim07G0182600' => 'rsi', 'Rhsim07G0182800' => 'rsi', 'Rhsim09G0027600' => 'rsi', 'Rhsim12G0157900' => 'rsi', 'Rhsim12G0158000' => 'rsi', 'Rhsim12G0158100' => 'rsi', 'RhsimUnG0221000' => 'rsi', 'Sabra12G0049600' => 'sbr', 'Sabra12G0049700' => 'sbr', 'Sabra15G0088700' => 'sbr', 'Sabra15G0088800' => 'sbr', 'Sabra15G0088900' => 'sbr', 'Sabra15G0089000' => 'sbr', 'SalBow5G0539' => 'sbo', 'SalBow5G0863' => 'sbo', 'SalBow5G2891' => 'sbo', 'SalBow5G3505' => 'sbo', 'SalBow6G0358' => 'sbo', 'SalBow6G6580' => 'sbo', 'Sc06g0010160' => 'sci', 'Sc13g0001650' => 'sci', 'Sc21g0003910' => 'sci', 'Sc21g0003920' => 'sci', 'Sc21g0003930' => 'sci', 'Sed0000208' => 'sed', 'Sed0005965' => 'sed', 'Sed0014679' => 'sed', 'Sed0017652' => 'sed', 'Sed0024936' => 'sed', 'SEGI_05329' => 'sgi', 'SEGI_05801' => 'sgi', 'SEGI_09837' => 'sgi', 'SEGI_11874' => 'sgi', 'SEGI_12049' => 'sgi', 'SEGI_17507' => 'sgi', 'SEGI_21980' => 'sgi', 'SEGI_25518' => 'sgi', 'SGA_v2.0_scaffold1G00281' => 'sas', 'SGA_v2.0_scaffold283G46989' => 'sas', 'SGA_v2.0_scaffold443G51702' => 'sas', 'SGA_v2.0_scaffold56G20040' => 'sas', 'SGA_v2.0_scaffold56G20043' => 'sas', 'SGA_v2.0_scaffold69G23121' => 'sas', 'SMO116G0035' => 'smo', 'SMO116G0145' => 'smo', 'SMO116G0326' => 'smo', 'SMO143G0188' => 'smo', 'SMO265G0047' => 'smo', 'SMO266G0031' => 'smo', 'SMO269G0049' => 'smo', 'SMO364G0353' => 'smo', 'Solyc03g113040.4' => 'sly', 'Solyc03g113060.3' => 'sly', 'Solyc03g113070.4' => 'sly', 'Solyc04g015970.3' => 'sly', 'Solyc06g070920.3' => 'sly', 'Solyc06g070930.3' => 'sly', 'Solyc06g070940.4' => 'sly', 'Solyc06g070950.2' => 'sly', 'Solyc06g070960.3' => 'sly', 'Sopen03g032120' => 'spe', 'Sopen03g032140' => 'spe', 'Sopen03g032150' => 'spe', 'Sopen04g007980' => 'spe', 'Sopen06g027200' => 'spe', 'Sopen06g027210' => 'spe', 'Sopen06g027220' => 'spe', 'Sopen06g027230' => 'spe', 'Sopen08g008060' => 'spe', 'Sopen09g012030' => 'spe', 'Sp2g24900' => 'spa', 'Sp2g24910' => 'spa', 'Sp2g24930' => 'spa', 'Sp2g24940' => 'spa', 'Sp4g23940' => 'spa', 'Sp5g14170' => 'spa', 'Sp5g14180' => 'spa', 'Sp5g14185' => 'spa', 'Sp5g14187' => 'spa', 'Sp5g14190' => 'spa', 'TAR622G0835' => 'tar', 'TAR622G0897' => 'tar', 'TAR629G0188' => 'tar', 'TAR629G0472' => 'tar', 'TAR629G2905' => 'tar', 'TAR629G3477' => 'tar', 'TAR633G1531' => 'tar', 'TAR636G1590' => 'tar', 'TAR636G2602' => 'tar', 'TAR729G0003' => 'tar', 'TAR729G0004' => 'tar', 'TAR729G0006' => 'tar', 'THA.LOC104819436' => 'tha', 'THA.LOC104821434' => 'tha', 'THA.LOC104821436' => 'tha', 'THA.LOC104824435' => 'tha', 'THA.LOC104824436' => 'tha', 'Thecc.03G081700' => 'tca', 'Thecc.03G082000' => 'tca', 'Thecc.05G148900' => 'tca', 'Thhalv10003613m.g' => 'esa', 'Thhalv10003645m.g' => 'esa', 'Thhalv10010099m.g' => 'esa', 'Thhalv10010102m.g' => 'esa', 'Thhalv10010110m.g' => 'esa', 'Thhalv10010112m.g' => 'esa', 'Thhalv10011002m.g' => 'esa', 'Thhalv10011038m.g' => 'esa', 'Thhalv10016127m.g' => 'esa', 'Thhalv10023241m.g' => 'esa', 'Thhalv10023276m.g' => 'esa', 'TPR.G2239' => 'tpr', 'TPR.G27372' => 'tpr', 'TPR.G27374' => 'tpr', 'TPR.G27377' => 'tpr', 'TPR.G34733' => 'tpr', 'TPR.G34739' => 'tpr', 'TPR.G3701' => 'tpr', 'TWI53G1231' => 'twi', 'TWI60G1099' => 'twi', 'TWI60G1613' => 'twi', 'TWI74G1635' => 'twi', 'TWI81G0417' => 'twi', 'TWI81G0730' => 'twi', 'unitig_0.g2531' => 'ugi', 'unitig_0.g2532' => 'ugi', 'unitig_62.g23560' => 'ugi', 'unitig_750.g28500' => 'ugi', 'unitig_8.g3504' => 'ugi', 'unitig_8.g3505' => 'ugi', 'vmacro01304' => 'vma', 'vmacro04828' => 'vma', 'vmacro04829' => 'vma', 'vmacro04983' => 'vma', 'vmacro04984' => 'vma', 'vmacro04987' => 'vma', 'vmacro07836' => 'vma', 'vmacro07837' => 'vma', 'vmacro07838' => 'vma', 'vmacro16561' => 'vma', 'vmacro16562' => 'vma', 'vmacro16563' => 'vma', 'vmacro22556' => 'vma', 'VMungo0945G0001' => 'vmu', 'VMungo1215G1995' => 'vmu', 'VMungo1215G3433' => 'vmu', 'VMungo1309G2294' => 'vmu', 'VMungo1309G2324' => 'vmu', 'VMungo1383G0969' => 'vmu', 'VMungo1383G1299' => 'vmu', 'VMungo1383G2081' => 'vmu', 'VMungo1383G2829' => 'vmu', 'Zm00001eb042110' => 'zma', 'Zm00001eb178670' => 'zma', 'Zm00001eb178680' => 'zma', 'Zm00001eb205350' => 'zma', 'Zm00001eb205360' => 'zma', 'Zm00001eb240330' => 'zma', 'Zm00001eb240340' => 'zma', 'Zm00001eb277060' => 'zma', 'Zm00001eb310770' => 'zma' ) $gf_id = 'HOM05D000610' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000610' ) $data_identifier = 'HOM05D000610' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 50, 'aar' => (int) 12, 'aag' => (int) 6, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 14, 'aox' => (int) 10, 'arhy' => (int) 18, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 13, 'cqu' => (int) 16, 'bca' => (int) 36, 'bol' => (int) 21, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 11, 'ccan' => (int) 25, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 7, 'cre' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 23, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 11, 'gra' => (int) 3, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 15, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 15, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310770' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1